Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi11g0841 ATGGGAGAGGGAGCAATTTGTGTCGAAGTATTGGCAGATGGAACGAATGAAAATGATGAGATATCAAGAACAGAATTGAAGCGGGACTACCAATGTCTCGCTGATACTGAATCTGACCCCTCTCCGAATAAGAAACAGGCCAAAGAAGTTTCAAATGATGACGTGCGCTCTGAGGTTTCCAATCCCAATATTTCTCCGAAAGAGAATGTCTTAACTTTTCAAGATATTAGTAGCCAACCATCTGAGTCGGCGAATACTAACCAGGCAGAGTGTGGGGAAGTAACGTCTACTTGTTTGGAGAATTCAAGTTCGGATGAGACCTTGAGTGACGGAGGGGGTGATCAGAATAATACGTCTCAGAATGATAAGGACACGAGTAGTGATGCAATAACGTCCCGTGTTGTGCTTGAAATTCCCAAGCATGCTAGTTCATCTGGAATCAGAAAGATTACTTTTAAGTTCAGTAAAAAGAAGGAAGACTATGATTATCAGTCACTTGCTACTAGAGACCGTCCTAGTATCTTTACTAATACACATGCATATGATGAAGAACATTTGGTGAGGGCTGATTGTAATACTGGGATGTTAGAAAGCTCCTATGGCATGGAATATGTTCAAACTGGAGATTTTAACTCATACGCTCCAAATATGGAATTGAAAATGTCAAAGAAGGTAGTCCCTAGCTACTATCCTACAAATGTTAAGAAGCTGTTATCAACTGGTATCCTTAAGGGGGCTCGAGTGAAGTATATTTATAATGCAGGAGAGATTGAACTAGCTGGGATTATTGAGGGTGGTGGATATTTGTGTGGCTGCTCAATGTGCAGTTTCTCCAGAGTGCTAAGTGCCTATGAGTTTGAGCAGCATGCTGGTGCCAGGACTAGACATCCAAATAATCACATATTCCTGGACAATGGAAGACCAATATATAGTATTATTCAGGAAATGAAATCTGCTCCTCTCAGCTTATTAGATGAGGTTATAAGGAATGTGGCTGGTTCCTCTGTGAATGAAGAGTGCTTCCAGAAATTACTTGGAGGTTACAAACAGGGAAATGGTATAGTCTGTGGTTGTTGTGACCGAGAGATAAGCCCTTCACAGTTTGAAGCTCATGCTGGAATGGCTGCCCGGCGTCAACCCTATCGCCATATATATACTTCCAATGGATTAACACTTCATGATATAGCTCTCTCATTGGCAAATGGTCAAAACCTTACCACGGGAGATAGTGATGATATGTGTGCAGTCTGTGGAGATGGAGGGGATTTGATTCTTTGCAATGGATGCCCCAGGGCTTTTCATGCAGCCTGCTTGGGTTTACAAGGTGTTCCAGAAAGCAATTGGCATTGTTTAAATTGTAGAGATAATGCTGGCAACAACAGAGAATCTTCTACGGCAAGGCCAATTATGATACGGTTGACACGAGTTGTTAAAGCACCAGAATTTGAGATGGGTGGTTGTGTCGTATGCAGGGAACATGATTTCAGTGTTGCTAAATTTGATGAGCGAACAGTTATCATTTGTGACCAGTGTGAGAAGGAGTATCATGTTGGGTGCTTGCGAGACACTGGGCTATGTGAGTTAGAAGAACTTCCCAAGGACAAGTGGTTTTGTTGTGATGACTGCAATCGAATATATGTGGCTCTCAAGAATTCAGTTTCCACTGGAGCAGAGAATATACCAGCTTCCTTGTCAGTCCTAATAAATAGGAAGCATGAGGAGAGGGGTTTATGTATTGATGGAGACATCAATGATATCCAGTGGCGAATTCTAAGTGGAAAAAGTCGTTATCCAGAACATTTACCGTTACTTTCACGGGCTGCTGCAATTTTTCGAATAATGTATTCTGTATTGCTTGTCAAGCTTTGTGAGACACAGGAGTGTTTTGATCCCATTGTTGCAGTATCTGGGCGTGACCTGATTCCTGTTATGGTCTATGGGAGAAATATTTCAGGCCAAGAGTTTGGGGGGATGTATTGTATTGTTTTAATTGTGAAGTCTGTTGTTGTATCGGCTGGGCTGCTTAGGATTTTTGGTCGTAATGTTGCCGAGCTTCCATTGGTAGCTACAAGTAGAGAACATCAAGGAAAAGGTTATTTCCAAGTGTTATTCTCTTGCATAGAGAAGTTACTGTCTTCCCTGAATGTGGAAAAGCTGGTTCTTCCTGCAGCTGAAGATGCCGAATCAATTTGGACTAAGAAATTAGGCTTCCGAAAATTGACCGAAGATCAGTTATCCAAATATCTCAGAGAGGTGCAGCTTACCCTCTTTAATAAAACTTCAATGCTGGAGAAGACAGTGCAGCTGGTGACAGAATGA 2319 0.4191 MGEGAICVEVLADGTNENDEISRTELKRDYQCLADTESDPSPNKKQAKEVSNDDVRSEVSNPNISPKENVLTFQDISSQPSESANTNQAECGEVTSTCLENSSSDETLSDGGGDQNNTSQNDKDTSSDAITSRVVLEIPKHASSSGIRKITFKFSKKKEDYDYQSLATRDRPSIFTNTHAYDEEHLVRADCNTGMLESSYGMEYVQTGDFNSYAPNMELKMSKKVVPSYYPTNVKKLLSTGILKGARVKYIYNAGEIELAGIIEGGGYLCGCSMCSFSRVLSAYEFEQHAGARTRHPNNHIFLDNGRPIYSIIQEMKSAPLSLLDEVIRNVAGSSVNEECFQKLLGGYKQGNGIVCGCCDREISPSQFEAHAGMAARRQPYRHIYTSNGLTLHDIALSLANGQNLTTGDSDDMCAVCGDGGDLILCNGCPRAFHAACLGLQGVPESNWHCLNCRDNAGNNRESSTARPIMIRLTRVVKAPEFEMGGCVVCREHDFSVAKFDERTVIICDQCEKEYHVGCLRDTGLCELEELPKDKWFCCDDCNRIYVALKNSVSTGAENIPASLSVLINRKHEERGLCIDGDINDIQWRILSGKSRYPEHLPLLSRAAAIFRIMYSVLLVKLCETQECFDPIVAVSGRDLIPVMVYGRNISGQEFGGMYCIVLIVKSVVVSAGLLRIFGRNVAELPLVATSREHQGKGYFQVLFSCIEKLLSSLNVEKLVLPAAEDAESIWTKKLGFRKLTEDQLSKYLREVQLTLFNKTSMLEKTVQLVTE 772
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi11g0841 772 FunFam PHD zinc finger protein 485 545 - -
Glsi11g0841 772 MobiDBLite consensus disorder prediction 41 55 - -
Glsi11g0841 772 ProSiteProfiles Zinc finger PHD-type profile. 484 545 IPR019787 -
Glsi11g0841 772 ProSiteProfiles Gcn5-related N-acetyltransferase (GNAT) domain profile. 618 759 IPR000182 GO:0016747
Glsi11g0841 772 SUPERFAMILY FYVE/PHD zinc finger 485 540 IPR011011 -
Glsi11g0841 772 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 656 742 IPR016181 -
Glsi11g0841 772 ProSitePatterns Zinc finger PHD-type signature. 487 542 IPR019786 -
Glsi11g0841 772 Gene3D - 616 766 - -
Glsi11g0841 772 SMART PHD_3 413 454 IPR001965 -
Glsi11g0841 772 SMART PHD_3 486 543 IPR001965 -
Glsi11g0841 772 MobiDBLite consensus disorder prediction 100 130 - -
Glsi11g0841 772 PANTHER AUTOIMMUNE REGULATOR 342 766 - -
Glsi11g0841 772 FunFam Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain-containing protein 401 479 - -
Glsi11g0841 772 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 401 479 IPR013083 -
Glsi11g0841 772 Pfam PHD-finger 413 454 IPR019787 -
Glsi11g0841 772 ProSitePatterns Zinc finger PHD-type signature. 414 453 IPR019786 -
Glsi11g0841 772 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 483 545 IPR013083 -
Glsi11g0841 772 Pfam Tify domain binding domain 347 396 IPR032308 -
Glsi11g0841 772 Pfam Tify domain binding domain 261 316 IPR032308 -
Glsi11g0841 772 ProSiteProfiles Zinc finger PHD-type profile. 411 456 IPR019787 -
Glsi11g0841 772 FunFam PHD zinc finger protein 648 755 - -
Glsi11g0841 772 CDD PHD1_AIRE 413 453 - -
Glsi11g0841 772 MobiDBLite consensus disorder prediction 31 69 - -
Glsi11g0841 772 SUPERFAMILY FYVE/PHD zinc finger 409 456 IPR011011 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi11g0841 Glsi-ChrGlsi11 5300374 5309715 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi11g0841 342 772 PHD Transcription Factor Family AT3G53680 66.284 0.0 613
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Glsi11g0841 TDBD 1.1e-12 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi11g0841 11 5300374 5309715 Glsi11g0841 11 5300374 5309715 ECH