Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi11g0837 ATGACTTCATTTTTGAAGCCCGAAAATGCTCTAAAAAGAGCAGAAGAATTAATCAATGTCGGACAGAAGCAGGATGCTTTGCAAACTCTTCATGGCCTTATCACTTCAAAAAGATATAGAGCATGGCAGAAGACCCTTGAAAGGATAATGTTCAAGTATGTAGAACTGTGTGTAGACATGAGGAAAGGGAGGTTTGCAAAGGATGGACTCATTCAGTACCGTATTATATGTCAGCAAGTTAATGTTAGTTCACTGGAGGAGGTGATCAAGCATTTCATGCATTTGTCAACTGAGAAAGCTGAACAAGCTCGCAGCCAGGCCCAGGCGTTGGAAGAGGCTCTCGATGTTGATGATTTAGAGGCAGATAAAAGGCCGGAGGACTTGATGCTGAGCTATGTGAGTGGGGAGAAAGGAAAAGACAGATCTGATCGGGAGCTTGTTACTCCATGGTTTAAATTTCTTTGGGAAACATACAGGACAGTGCTTGAAATATTACGCAACAACTCAAAACTGGAAGCTTTATATGCTATGACAGCACACCGGGCCTTCCAGTTTTGTAAGCAATATAAGCGGACTACAGAGTTTCGCAGACTTTGTGAAATTATAAGAAACCATCTAGCCAATCTTAATAAATATCGGGACCAACGGGACCGACCTGATATTTCAGCACCTGAAAGCTTGCAACTATATCTTGATACCCGCTTTGAGCAGCTAAAAGTTGCCACTGAGCTTGAACTCTGGCAGGAAGCTTTTCGATCAGTTGAAGATATTCATGGACTAATGTGCATGGTCAAGAAAACACCCAAGTCATCCTTGATGGTTGTTTACTATGCAAAGCTCACAGAAATATTTTGGATATCATCAAGTCATCTATATCATGCCTATGCGTGGTTCAGGCTCTTTTTGCTACAGAAGAGCTTCAATAAAAATCTGAGTCAGAAGGATTTGCAATTGATAGCTTCATCTGTTGTTCTGGCTGCGCTTTCAGTGCCTCCCCATGATCACAGACATGGTGCTTCTCATTTGGAACTGGAGCATGAAAAGGATAGAAATTTGAGGATGGCTAATCTCATTGGTTTTAATCTTGAAACTAAAGCTGAGAGCAGAGAAGTGCTTTCAAGGCCATCCCTTCTCGCTGAACTGGTGTCCAAGGGTGTCATGTCTTGTGTAACTCAGGAAGTGAAGGACATTTACCATCTCCTGGAACATGAATTTCTTCCCTTGGATCTTTCACTAAAAGTTCAGCCACTGTTAACTAAAATCTCAAAGTTGGGGGGCAAGCTTTCCACTGCTTCTTCTGTCCCAGAGGTGCAACTGTCTCAGTATATTCCAGCACTGGAAAAACTAGCTACCTTGAGGTTGCTACAGCAGGTGTCCAATGTGTACCAGACAATGAAGATTGAGACCTTATCTGGGATGATCCCCTTTTTTGATTTTTCTGTTGTGGAAAAGATTTCTGTTGATGCTGTTAAGCAAAAGTTTGTATCCATGAAAGTTGATCACATGAGAAGTGTTGTGATTTTCTGCAAGAGGAGTCTTGAGTCTGATGGCTTAAGGGATCACTTGGCTAATTTTGCCGAACATTTGAATAAGGCAAGACAAATTATTCATCCTCCTGATAGGAAACCATCAAAAATTGGAGCTTTGCTTCCCACTTTGACAGAGGTTGTGGCCAAGGAGCACAAGAGGCTTCTTGCTCGAAAATCAATAATTGAGAAGCGGAAAGAAGAACAAGAACGGCAGCTTCTTGAAATGGAACGGGAGGAGGAGTCAAAGAGGTTAAGACTACAGAAAATAACTGAAGAAGCAGAACAAAGAAGACTTGCCAATGAGTATGAGCAGAGGAAGAATCAGAGGATCCTCAGGGAAATAGAGGAAAGGGAAATGGAGGAAGCCCAAGCTTTGCTTCAGGAAGCAGAGAAGCGTATTAAAAAGAAGGGAAAGAAGCCAATCATAGAGGGTGAAAAAATGACCAAGCAATCCTTGATGGAGTTGACATTGACTGAGCAACTCCGAGAAAGACAAGAAATGGAAAAGAAACTGCAAAAATCAGGTAAAACCATGGATTATTTGGAAAGAGCAAAAAGAGAAGAGGCTGCTCCCCTGATTGAAGCTGCATATCAAAAGCGCCTAGTCGAAGAGAGGAATCTTCATGAGCGTGAACAACAGCAAGAGATTGAGCTTAGCAAACAGCGCCATGAGGGAGATCTCAAGGAGAAGGAGAGGCTGGCTCGAATGATGGGAAATAAAGAGATTTATCAAGAGAGAGTTGTCAGTCGTCGTCATGCAGAATTTAGTAGACTGAGGAGGGAAAGAGAGGATCGAATCTCAAGGATTTTACAGTCCAGGACACAAGAGAGGGAAAAGATGAGGAAGTTGAAGTTTTATCTCAAGTTAGAAGAAGAGAGACAGCAAAAATTGCATGAGGAGGAGGAAGCTCGGAAGCATGAAGAGGCTGAGAGGCGAAAAAAGGAAGAGGCTGAGCGCTTAGCAAAATTGGCCGAGATAGCTGAAAAGCAGAAGCAAAGAGAGCGGGAACTTGAAGAGAAGGAGAGGCAAAGGAGAGAAGCACTGTTGGGCAGAACTACTGATGCAGCTATGAAGCCTTCTGAACCTCTCGCCCTTCAATTGGAGTCAGGATCTACTGCTCCTGCTGCCGCTGCTGCAGCAGCACCAACCCCAGGGAAATACGTCCCTAAGTTCCGTCGTGAGAGAACAGAAAGCACAGGCCCTGTTCCTCCTCCAGAAACTGACAGATGGACAAACTCCAGCAGCAGGCAGGATGGTGACAGGTGGCGTAGTGATGATCGACGACCTAGCTTTGGTCCTGGTGGGGGTTCAAGGTCATCTTCATCATGGTCATCATCTAGGAATCCACGCGATCGTTGA 2889 0.4389 MTSFLKPENALKRAEELINVGQKQDALQTLHGLITSKRYRAWQKTLERIMFKYVELCVDMRKGRFAKDGLIQYRIICQQVNVSSLEEVIKHFMHLSTEKAEQARSQAQALEEALDVDDLEADKRPEDLMLSYVSGEKGKDRSDRELVTPWFKFLWETYRTVLEILRNNSKLEALYAMTAHRAFQFCKQYKRTTEFRRLCEIIRNHLANLNKYRDQRDRPDISAPESLQLYLDTRFEQLKVATELELWQEAFRSVEDIHGLMCMVKKTPKSSLMVVYYAKLTEIFWISSSHLYHAYAWFRLFLLQKSFNKNLSQKDLQLIASSVVLAALSVPPHDHRHGASHLELEHEKDRNLRMANLIGFNLETKAESREVLSRPSLLAELVSKGVMSCVTQEVKDIYHLLEHEFLPLDLSLKVQPLLTKISKLGGKLSTASSVPEVQLSQYIPALEKLATLRLLQQVSNVYQTMKIETLSGMIPFFDFSVVEKISVDAVKQKFVSMKVDHMRSVVIFCKRSLESDGLRDHLANFAEHLNKARQIIHPPDRKPSKIGALLPTLTEVVAKEHKRLLARKSIIEKRKEEQERQLLEMEREEESKRLRLQKITEEAEQRRLANEYEQRKNQRILREIEEREMEEAQALLQEAEKRIKKKGKKPIIEGEKMTKQSLMELTLTEQLRERQEMEKKLQKSGKTMDYLERAKREEAAPLIEAAYQKRLVEERNLHEREQQQEIELSKQRHEGDLKEKERLARMMGNKEIYQERVVSRRHAEFSRLRREREDRISRILQSRTQEREKMRKLKFYLKLEEERQQKLHEEEEARKHEEAERRKKEEAERLAKLAEIAEKQKQRERELEEKERQRREALLGRTTDAAMKPSEPLALQLESGSTAPAAAAAAAPTPGKYVPKFRRERTESTGPVPPPETDRWTNSSSRQDGDRWRSDDRRPSFGPGGGSRSSSSWSSSRNPRDR 962
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi11g0837 962 ProSiteProfiles PCI domain profile. 316 513 IPR000717 -
Glsi11g0837 962 Hamap Eukaryotic translation initiation factor 3 subunit A [EIF3A]. 1 962 IPR027512 GO:0005852
Glsi11g0837 962 Gene3D UVR domain 217 267 - -
Glsi11g0837 962 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3, THETA SUBUNIT 1 950 IPR027512 GO:0005852
Glsi11g0837 962 Coils Coil 615 649 - -
Glsi11g0837 962 SMART motif in proteasome subunits, Int-6, Nip-1 and TRIP-15 441 532 IPR000717 -
Glsi11g0837 962 Coils Coil 796 857 - -
Glsi11g0837 962 FunFam Eukaryotic translation initiation factor 3 subunit A 217 268 - -
Glsi11g0837 962 Gene3D - 353 507 - -
Glsi11g0837 962 Gene3D - 268 341 - -
Glsi11g0837 962 MobiDBLite consensus disorder prediction 804 861 - -
Glsi11g0837 962 MobiDBLite consensus disorder prediction 804 962 - -
Glsi11g0837 962 MobiDBLite consensus disorder prediction 923 938 - -
Glsi11g0837 962 Pfam PCI domain 375 508 IPR000717 -
Glsi11g0837 962 FunFam Eukaryotic translation initiation factor 3 subunit A 352 494 - -
Glsi11g0837 962 Coils Coil 561 602 - -
Glsi11g0837 962 Coils Coil 667 687 - -
Glsi11g0837 962 FunFam Eukaryotic translation initiation factor 3 subunit A 268 342 - -
Glsi11g0837 962 Coils Coil 93 120 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi11g0837 Glsi-ChrGlsi11 5270359 5276532 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi11g0837 1 962 Eukaryotic Initiation Factors Gene Family AT4G11420 72.319 0.0 1323