Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi11g0815 ATGGAACTCGTATGGGATAACGGCCCAGTGGAGATGCACACCCAGAACCAACGACCTCTCAGAAAACCGCCGCCGCCGCCGAGCTACGCCGACGATGTAATTCCTTCAGGGCCTTGTACGGTAAGGGAGATTAGACCCTCACAGCAAGTAGGAAACTACCATAACCCACATCTCTTCATGCAAGAAGATGAAATGACTCCGTGGCTTCACTATCCTATTGTCGACGATTGTCCCTTGGATCACAATTTCTGCGCCGACCTCCTCTACTCGCCACCCACCGTCAATAATAGCAACCAAATTAATAACAGTGCCATGCAAACCCCTGTCGTGACGGAACTCCAACCGCCGTCAAAATCAGGGGCTCCTCCCCCGCCGATACCGCCCACAAGGAGACGGGATCAGCAGGTGCAGACGAAGATACATGACTCCGTGCACTTTTCAAATCTCAATGCGAGAGTTGAACCCGGGCAGTCGAGTTCGAAGACCGTGGCGAGAGAATCCACGGTGGTGGATTCATGCGATACTCCAGCTGTGGCGGCTTCCAAAGTTTCGGAGACTATAAGAAGTTCGGCGGAGCCAACAGAAGGAGACCCCTGCCATAGGAGCATGAGCACTACCGGAATAGCGGTGCCTTCGACGACGTCCGGTGGTGGAGGGACGGGAGGGAGGGAGGCGATGACATGTGAGATGACAGTGACGTCGTCGCCGGGCGGATCGAGTGACAGTGCTGAACCGGTTCACAGATTTCCGGCCAAGGATCGGAAGCGGAAGGGCCGGGAAGCCGAGGACTCAGAGTGTCAGAGCGAGGATGTGGATTATGAATCTGCGGAAGGAAAAAAAAAAGTTCGCGGATCAACATCAACAAAGAGATCTCGTGCTGCAGAGATCCATAATCTCTCGGAGAGGAGGCGTCGGGATAGGATTAATGAGAAGATGAGAGCCTTACAAGAACTGATTCCTCGGTGCAATAAGTCTGACAAAGCTTCAATGCTGGATGAAGCGATTGAATACTTGAAGTCATTGCAGTTACAAGTGCAGATGATGTCCATGGGATATGGAATGGTACCGATGATGTTTCCTGGAATGCAGCAGTATATGCCGGCAATGGGAATGGGAATGAACAGGCCAGTAATGCCGTTTCCCAATATGGTAGGTGGTTCAGCTTTGCCAGCAGCCACTCATTTGGGACCAAGGTTCCCTGTGCCTCCTTTCCTTATGTCCCATGTTCCTGCACCTGATTTATCCAGAAGCCGACCCCCAAATCACTCAGATAATAATAATATGCTTTCCACATCTGATCCAACTCAGTCGCGGATCCCAAACTTCACTGATCCTTATCACCAATACTTTGGTCCTCACCAGATGCAGCTACAATTAATGCAGAATCAGGCAATGATCCAACAAAATGTCAGTAAGCCAAGTACCTGTAGGGGCCATGAGAATTCAAAAAAAACATCAGTCAGGAGATAG 1470 0.5082 MELVWDNGPVEMHTQNQRPLRKPPPPPSYADDVIPSGPCTVREIRPSQQVGNYHNPHLFMQEDEMTPWLHYPIVDDCPLDHNFCADLLYSPPTVNNSNQINNSAMQTPVVTELQPPSKSGAPPPPIPPTRRRDQQVQTKIHDSVHFSNLNARVEPGQSSSKTVARESTVVDSCDTPAVAASKVSETIRSSAEPTEGDPCHRSMSTTGIAVPSTTSGGGGTGGREAMTCEMTVTSSPGGSSDSAEPVHRFPAKDRKRKGREAEDSECQSEDVDYESAEGKKKVRGSTSTKRSRAAEIHNLSERRRRDRINEKMRALQELIPRCNKSDKASMLDEAIEYLKSLQLQVQMMSMGYGMVPMMFPGMQQYMPAMGMGMNRPVMPFPNMVGGSALPAATHLGPRFPVPPFLMSHVPAPDLSRSRPPNHSDNNNMLSTSDPTQSRIPNFTDPYHQYFGPHQMQLQLMQNQAMIQQNVSKPSTCRGHENSKKTSVRR 489
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi11g0815 489 MobiDBLite consensus disorder prediction 176 297 - -
Glsi11g0815 489 CDD bHLH_AtPIF_like 292 355 IPR047265 -
Glsi11g0815 489 Gene3D - 287 350 IPR036638 GO:0046983
Glsi11g0815 489 MobiDBLite consensus disorder prediction 272 297 - -
Glsi11g0815 489 MobiDBLite consensus disorder prediction 469 489 - -
Glsi11g0815 489 MobiDBLite consensus disorder prediction 110 137 - -
Glsi11g0815 489 MobiDBLite consensus disorder prediction 1 32 - -
Glsi11g0815 489 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 292 341 IPR011598 GO:0046983
Glsi11g0815 489 MobiDBLite consensus disorder prediction 410 439 - -
Glsi11g0815 489 Pfam Helix-loop-helix DNA-binding domain 297 342 IPR011598 GO:0046983
Glsi11g0815 489 PANTHER TRANSCRIPTION FACTOR PIF3 1 448 IPR044273 GO:0003700|GO:0006355
Glsi11g0815 489 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 295 370 IPR036638 GO:0046983
Glsi11g0815 489 SMART finulus 298 347 IPR011598 GO:0046983
Glsi11g0815 489 MobiDBLite consensus disorder prediction 246 264 - -
Glsi11g0815 489 MobiDBLite consensus disorder prediction 418 439 - -
Glsi11g0815 489 FunFam Basic helix-loop-helix transcription factor 287 350 - -
Glsi11g0815 489 MobiDBLite consensus disorder prediction 227 241 - -
Glsi11g0815 489 MobiDBLite consensus disorder prediction 199 220 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi11g0815 Glsi-ChrGlsi11 5152083 5155427 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi11g0815 1 347 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G20180 41.873 1.31e-60 200
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Glsi11g0815 HLH 4.3e-13 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi02g2949 02 78271195 78274549 Glsi11g0815 11 5152083 5155427 CCT
Glsi11g0815 11 5152083 5155427 Glsi11g0815 11 5152083 5155427 ECH