Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi11g0783 ATGCAGGGTTCACCGAGTGGTAGTGTTGATGCATTTTCTGCTGGTTCTATTAGTGGGTCGCTAATGGTGTCTAAGGAGGATAACTTGGTCCTTTCTTCGGAGGACTCTTCGTGCCCAGATGAGTCGGACCTTGAATTAGGTCTCGGGTTGAGCCTTTCTCATCCTCGTGTAAAGTCCCAGCCTACTCTAACGAGTCAGTATGCTAGAATTTTGACGGCTAAGGATTTTCCTTCTGTGGTTTCTTCCTCTGCCTCTTCATCAGCGCCATCCTCCTCCTCTTCCTCTTCCTCGCCTTCCTCATTAAGCAGGGCTAACGTTACCGCTGGTACCAAGAGAACTGCTGATTCTGTTGCTGCTACAAACGGTCCCAGCCAGGTTATTGGATGGCCTCCTCTTGGAGCATATAGAATGAATAGCTTTAATAACCATGCAAAATCACCAGCCACTGATGTATTCAACTCTATAGTTGAACAAGCTAAAAGCAATAATACAGTGTTAAGGAAGACTACTGACAATGGCAGTAATAAAAACGACATTAGCGTCAAAGAAAAAGGACACATCAGGAGTTCTCGATTTGTGAAAGTAAGTATGGATGGGATACCTATTGGAAGGAAGGTTGATTTGAGTGCTCATAGATCGTATGAAACCTTAGCACGAACTTTGGAGGATATGTTTAATGAACCTACTCCAGTTTTCACTTGCAAAGGATCACATGGGAAGGATCATGGCATTACAGTTGGAGCAGAAAGACAGTCAAAATTGCTGGATGGATCTTCCAAGTATGTGCTGACCTATGAAGACAAGGAAGGAGACTGGATGCTTGTTGGAGATGTTCCTTGGGGGATGTTCCTTGGCTCTGTGAGGAGGCTAAGAATCATGAGGACATCAGAGGCAAATGGACTTGCACCAAGAATGGAGGGAAAGAACAGCAGACTGAGAAGTGAGAAGTGA 951 0.449 MQGSPSGSVDAFSAGSISGSLMVSKEDNLVLSSEDSSCPDESDLELGLGLSLSHPRVKSQPTLTSQYARILTAKDFPSVVSSSASSSAPSSSSSSSSPSSLSRANVTAGTKRTADSVAATNGPSQVIGWPPLGAYRMNSFNNHAKSPATDVFNSIVEQAKSNNTVLRKTTDNGSNKNDISVKEKGHIRSSRFVKVSMDGIPIGRKVDLSAHRSYETLARTLEDMFNEPTPVFTCKGSHGKDHGITVGAERQSKLLDGSSKYVLTYEDKEGDWMLVGDVPWGMFLGSVRRLRIMRTSEANGLAPRMEGKNSRLRSEK 316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi11g0783 316 MobiDBLite consensus disorder prediction 81 123 - -
Glsi11g0783 316 SUPERFAMILY CAD & PB1 domains 187 293 - -
Glsi11g0783 316 FunFam Auxin-responsive protein 185 305 - -
Glsi11g0783 316 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 43 300 IPR003311 GO:0005634|GO:0006355
Glsi11g0783 316 Pfam AUX/IAA family 86 304 IPR033389 -
Glsi11g0783 316 ProSiteProfiles PB1 domain profile. 190 297 IPR000270 GO:0005515
Glsi11g0783 316 Gene3D - 186 307 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi11g0783 Glsi-ChrGlsi11 4908404 4911517 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi11g0783 186 313 B3 DNA Binding Superfamily AT1G59750 33.333 5.49e-14 70.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Glsi11g0783 AUX_IAA 1.1e-60 CL0072
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi02g2981 02 78565317 78571125 Glsi11g0783 11 4908404 4911517 CCT
Glsi11g0783 11 4908404 4911517 Glsi11g0783 11 4908404 4911517 ECH