Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi11g0772 ATGGAAGCACGCCCTGCTATATCCATCGAAAGATCAAGTACAAAGCAACTCAATAACATGGGTATGTCTGAAGCACTGTCTTCATCGTTGCCAGTCCTTCCAACGCCCCTAGAAGAGACATATACCAAGTTCCCTGATTCTCAGCTGGCTTTTGGGGCAAAAGAGCTTATGACAAGGCCTCTGACTCATTTGAATCATTTAAATTCCAGTGGAGTAGTTGGGCACATGTTTTCATCCTCCCCTGGATATTCAACTGATCTTCATCACTCATCCCTTTCACCTCAAGAAAAGCAATCAAGAAATGCTCATTTTATTTCACAGACTTCGAGTAACATGGCTTCATTGCCATTTTCTTATTCTTCAAATTGTGGACCACTTCCTTCTACAACATCAAGTCATTATTTCAAAGAAAACAGTGTTTCCTGGCATACAGATGCCCTGCCTAGCATTCTTGATTTTCCTGTAAATACCTCCATTGAGAATAGTCAAGCAGAAAGCAGTGCCTGCACTATCATGGCATCAGAGGAGGATGGTAAACGAAATAATTGGCAGGAGTGGGCTGACCAGCTAATCAGTGATGATGACACTTTGGCTTCTAATTGGAACGACCTTCTTACTGACAACATTCAGGATCTGGAGCCAAAGGTGGCATGCCAGGTTTCAAAATCATCACCTATTCCAGGATCCCAGTTCCTAGGTCATCAGCAACTACCTGCTCCATCTGGAGAAAATTGCGTTAATGCTCCCCCCTCTTCCTCAGCAAATTCTGCTACTGCCAAGCCAAGGATGCGTTGGACGCCTGAGCTTCATGAGACTTTTGTGGAGGCTGTCAACCGACTTGGTGGCAGTGAAAGAGCTACCCCTAAGGGTGTGCTGAAGCTCATGAAAATTGAAGGATTAACTATATATCATGTTAAAAGCCACTTGCAGAAATACAGGACAGCTAGATATAGACCGGAATCATCTGAAGGATCCTCAGAGAAAAGACTAACTCCGATTGAAGAGATGCCTTCTCTAGACTTGAAAACTGGTATTGAGATCACCGAAGCTCTGCGACTGCAGATGGAGGTTCAGAAGCGGTTGCACGAACAGCTTGAGATCCAAAGAAATCTACAGTTGCGAATAGAAGAACAAGGAAAGTACCTCCAGATGATGTTTGAGAAGCAATGCAAATCTGGCATTGACAAGTTAAAGGCATCATCATGTAACCTGGAGAGTCCATCTGGGGTGTCTTCAGATGCTATTAAAGATTCTCCTGCTAGAAGTGAAATGGAAGCGTCGCAAGTTGACCATTGCAGGTCAGGACGTGATGAAGCTAATGGCAGTACTGCAGTTGAGGAAAACTCTCTGGAAGTGGGTGAGAAGAATGATGGTCCCGAAAGTCAAGCTGCTGAGAATCCCAAGCAACATGCTAGTGAAGACGGTGCTCAAGTCTCAAAGCGTCAAAGGACAGACGATTAA 1461 0.4442 MEARPAISIERSSTKQLNNMGMSEALSSSLPVLPTPLEETYTKFPDSQLAFGAKELMTRPLTHLNHLNSSGVVGHMFSSSPGYSTDLHHSSLSPQEKQSRNAHFISQTSSNMASLPFSYSSNCGPLPSTTSSHYFKENSVSWHTDALPSILDFPVNTSIENSQAESSACTIMASEEDGKRNNWQEWADQLISDDDTLASNWNDLLTDNIQDLEPKVACQVSKSSPIPGSQFLGHQQLPAPSGENCVNAPPSSSANSATAKPRMRWTPELHETFVEAVNRLGGSERATPKGVLKLMKIEGLTIYHVKSHLQKYRTARYRPESSEGSSEKRLTPIEEMPSLDLKTGIEITEALRLQMEVQKRLHEQLEIQRNLQLRIEEQGKYLQMMFEKQCKSGIDKLKASSCNLESPSGVSSDAIKDSPARSEMEASQVDHCRSGRDEANGSTAVEENSLEVGEKNDGPESQAAENPKQHASEDGAQVSKRQRTDD 486
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi11g0772 486 FunFam Myb family transcription factor 259 317 - -
Glsi11g0772 486 MobiDBLite consensus disorder prediction 243 260 - -
Glsi11g0772 486 Gene3D - 259 318 - -
Glsi11g0772 486 Pfam MYB-CC type transfactor, LHEQLE motif 345 392 IPR025756 -
Glsi11g0772 486 MobiDBLite consensus disorder prediction 402 486 - -
Glsi11g0772 486 SUPERFAMILY Homeodomain-like 259 314 IPR009057 -
Glsi11g0772 486 Pfam Myb-like DNA-binding domain 262 313 IPR001005 -
Glsi11g0772 486 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 264 317 IPR017930 -
Glsi11g0772 486 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 244 468 IPR044848 GO:0003700
Glsi11g0772 486 Coils Coil 348 368 - -
Glsi11g0772 486 NCBIfam myb-like DNA-binding domain, SHAQKYF class 260 314 IPR006447 GO:0003677
Glsi11g0772 486 MobiDBLite consensus disorder prediction 418 437 - -
Glsi11g0772 486 MobiDBLite consensus disorder prediction 243 262 - -
Glsi11g0772 486 MobiDBLite consensus disorder prediction 314 335 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi11g0772 Glsi-ChrGlsi11 4855212 4858599 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi11g0772 1 425 G2-like Transcription Factor Family AT4G28610 48.736 2.00e-107 323
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Glsi11g0772 Myb_DNA-binding 9.9e-09 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi02g2993 02 78662947 78664928 Glsi11g0772 11 4855212 4858599 CCT
Glsi11g0084 11 648397 651620 Glsi11g0772 11 4855212 4858599 CCT
Glsi11g0772 11 4855212 4858599 Glsi11g0772 11 4855212 4858599 ECH
Glsi02g2993 02 78662947 78664928 Glsi11g0772 11 4855212 4858599 ECH