Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi11g0770 ATGATAACCTTTCACAAGCCTCCTGCTCTCCTCTTCTACATACTCTTGCTATCTTTTCTTCCATTGAAAATAACTGCATCACCAAGAGCAGAAGCAGAAGCTCTTGTCAAATGGAAAAACAGTTTATCTCCTCCTCTTCCATCTTCTCTCCACTCATGGTCCCTCACCCACCCGGGCAACCTTTGCAACTGGGGTGCCATTGTTTGTGACAGCACTAATACAACAGTCTCGGAGATAAACCTCTCTCATGCCAGTCTCACTGGGACACTCACTGCGTTGAATTTTGCATCCCTCCCCAATCTTACCCGCCTCAACCTCAATGGCAACAATTTCAGTGGTTCAATACCATCTGCCATTGGTTACCTCTCCAAGCTCACTGTCTTGGACTTAGGAAACAACTTATTTGATGGCACACTGCCTTCCGATCTAGGCCAGCTAAAGGAACTTCAATACATTAGCTTTTACAACAACAGCCTTAATGGTACCATTCCCTACCAGCTCACGAATCTCCTGAAGGTATGGCACCTAGACTTCGGATTAAACTTTTTTATCTCTCCTCCTGACTGGTCCCAATATTTAGGCATGCCTTCCTTAACCTACCTCGGGTTGGCTATAAATAAATTCACTTCTGAATTTCCAAGTTTCATACTGGAGTGTCAAAACTTGACGTTTCTTGACCTGTCTCAGAATCCTATGACTGGACCGATACCAGAATTGGTGTATTCGAATCTGGGCAAACTTGAATACCTCAATCTGACCCATTGTGGGCTACAAGGACAATTGTCATCAAACTTGTCCAATCTTTCTAATCTCAAAGAAATTCTTTTGGGGGTTAACAAGTTTACTGGTCCTATTCCCTCGGACATAGGATTGATATCTGGACTTCAGATTCTTGAATTGAATGATAATGCACTCCAAGGGGAAATTCCTTCCTCTCTTGGCCAACTCAGTGAGTTATGGCATCTTGATCTCCACGAGAATTTCTTGAATTCTACAATTCCTTTTGAGCTTGGCCTCTGTACTAATCTAACCTTTCTGGCTTTGGCAGAGAATAATTTGACTGGTTCCCTGCCTTTGTCATTATCCAATCTGACCAAAATAACAGAATTGGGTTTATCAGATAATTTTTTTTCTGGTCAAATTTCTGCTTCGTTGATCTCTAATTGGATTGAATTGATTTCTCTGCAACTTCAAAACAACAGATTCATGGAAAAAATTCCTGCAGAGATTGGCCTGTTGACAAAAATCAATTATCTCTATCTGTACAACAATCAATTCTCCGGTCCTATTCCTCCCGAAATTGGGAACTTGAAAGAAATGATAGAATTAGACCTTTCGTCAAACCAATTCTCTGGTCCAATTCCTCCAACCATATGGAGTCTTAAAAACATTATAGCCATAAATCTTTTCTTCAATAGCCTCTCTGGAATCATTCCTCCGAATATTGGAAACCTAACTTCACTGCAAATTTTTGATGTGAACAATAATCTTTTCCATGGAGAGTTGCCAGAGACCATTTCTCAGCTAAGCAAGTTACAGGTACTTTCTGTGTTCACCAATAACTTTTCGGGCAGCATTCCCAGAGATTTTGGGAAGTATATCCCAAACTTGACTCGTGTCCTAATTTCAAACAACAGCTTCTCTGGAGAACTGCCGCCTGGCTTGTGTAGTGGTTTCGCACTTGTAGAGTTTATGGTGAATAACAACAGTTTTTCAGGGTCATTGCCAAAGTGCTTGAGAAATAGTTCAGCACTAACATTGGTGAAGCTTGAAGAAAATCACTTCATTGGAAACTTCACAGAAGCGTTTGGGGTTCACCCAAATCTTACTTCTATCTCACTCAGTGGCAACGAGTTTGTTGGTGAACTCTCCCCAGAGTGGGGTGAATGTGTAAATTTAACCAGGATGGATATGGACAAAAATAAACTTTCCGGAAAAATTCCACCTGAGCTGGGTAAGTTAATCCAATTAAGATATCTAAGTCTGCACTCCAATGAATTCACCGGCAACATCCCAACCGAAATGGGAAATCTAAGCCAGCTTTACTTGTTCAACTTGAGCAGAAACCATTTGACAGGAGAAATCCCCCAGAGTATTGGCAGATTGACTCAGCTTGATTATCTTGATTTATCAAATAACAACTTGACGGGAAGCATACCAAAAGAGCTCAGTAATTGTGACGGCTTAATTAGATTGAATTTAAGCCATAACAATCTATCTGGGGAGATACCATCTGAACTTGGCAGTCTCTTCTCACTCCAGTACTCCTTGGACCTCAGCAGTAACTCTCTTTCAGGGTCAATTCCTCAAAACCTTGAAAAGCTCACTCATTTGGAGATTTTGAACATCTCACACAACCATCTTTCAGGGAGAATCCCACAATCCCTGTCAAGTATGCTCAGCCTTCAATCTATCGATTTTTCTCACAACTTCTTGACGGGTCCAATCCCAACTGGAGGTATTTTCCAACATGCACCTGCTGAAGCTTATATTGAAAACTCGGGTTTGTGTGGTGAGGCAAAAGGATTAACTACCTGTTCCACAGAATCTACCCCAGAAGAATCTGGAGGGATTAAGATGAAGGTTCTTCTTGGTGTTATTATACCAGTTTGTGGGCTATTAATTATAGGGGCGATTGTTGTTGTGATCCTTGTGTTCCATCCAAGCGCCAAACTTCTTGACGAAGAGACCAGAGATGCTCAAAAGAACGAAAAAACTGTATGCACGGTGTGGGGAAGAAATGAAAAACTCACATTTGCTGAAATTGTTGAAGCCACAGATGACTTCAATGACAAGTACTGCATTGGAAACGGAGGTTTCGGAAGTGTTTACAGAGCAGAATTGCCTACAGGTCTAGTTGTTGCTGTCAAAAGATTCAATATCTCAGACTCTAGTGACATTCCAGCTGAGAATCGACAGAGTTTTGAGAATGAGATAAGAACACTTACGGAAGTGAGACACCGTAATATCATAAAGCTTTATGGGGGGTTCTGTTCCAGCAGCGGACGTATGTACCTGGTTTATGAACATGCAAAAAGAGGCAGCTTGGGAAAAGCGTTGTATGACGAGGAAAATATGTTGGAAATGAGTTGGCCTACAAGGGTGAAAATTGTGCAGGGAATAGCACATGCTATTGCCTACCTGCACACTGACCATTCTCCACCAGTAGTACACCGAGATTTGACGTTGAATAATATATTACTGGACTCAGAATTTCAACCCCGCCTCGCAGATTTTGGCATATCGAAGCTCCTAAGCCCCGATTCAACAAGCTGGACCTCAGTTGCTGGGTCCTATGGCTACATGGCTCCAGAGCTAGCACAAACTATGAGAGTTACGGTTAAGTGCGATGTTTATAGTTTTGGAGTGGTGGCGTTAGAGATCATAATGGGAAAGCACCCTGGAGATTTCTTAGCCACAATATCTTCAATGAAGTCTGTCTCATCAATGGAGAATCCACAGTTGTTGAAGGATCTGATAGACCAGAGACTCCCACCTCCAACGGGCCAGATAGCTGAAGCAGTAGCCTTCGTAATGACCATAGGCTTGGCATGCACGCGTACCAGCCCCGAGTCCAGACCCTCCATGCGTACTGTGGCGCAGGAACTATCGTCTAACACGAGGGCTCACCTTTCCGAACCGTTTGGCGTGATAACTATAAGCAACCTAACAGGGTTTCATAAATAG 3687 0.4247 MITFHKPPALLFYILLLSFLPLKITASPRAEAEALVKWKNSLSPPLPSSLHSWSLTHPGNLCNWGAIVCDSTNTTVSEINLSHASLTGTLTALNFASLPNLTRLNLNGNNFSGSIPSAIGYLSKLTVLDLGNNLFDGTLPSDLGQLKELQYISFYNNSLNGTIPYQLTNLLKVWHLDFGLNFFISPPDWSQYLGMPSLTYLGLAINKFTSEFPSFILECQNLTFLDLSQNPMTGPIPELVYSNLGKLEYLNLTHCGLQGQLSSNLSNLSNLKEILLGVNKFTGPIPSDIGLISGLQILELNDNALQGEIPSSLGQLSELWHLDLHENFLNSTIPFELGLCTNLTFLALAENNLTGSLPLSLSNLTKITELGLSDNFFSGQISASLISNWIELISLQLQNNRFMEKIPAEIGLLTKINYLYLYNNQFSGPIPPEIGNLKEMIELDLSSNQFSGPIPPTIWSLKNIIAINLFFNSLSGIIPPNIGNLTSLQIFDVNNNLFHGELPETISQLSKLQVLSVFTNNFSGSIPRDFGKYIPNLTRVLISNNSFSGELPPGLCSGFALVEFMVNNNSFSGSLPKCLRNSSALTLVKLEENHFIGNFTEAFGVHPNLTSISLSGNEFVGELSPEWGECVNLTRMDMDKNKLSGKIPPELGKLIQLRYLSLHSNEFTGNIPTEMGNLSQLYLFNLSRNHLTGEIPQSIGRLTQLDYLDLSNNNLTGSIPKELSNCDGLIRLNLSHNNLSGEIPSELGSLFSLQYSLDLSSNSLSGSIPQNLEKLTHLEILNISHNHLSGRIPQSLSSMLSLQSIDFSHNFLTGPIPTGGIFQHAPAEAYIENSGLCGEAKGLTTCSTESTPEESGGIKMKVLLGVIIPVCGLLIIGAIVVVILVFHPSAKLLDEETRDAQKNEKTVCTVWGRNEKLTFAEIVEATDDFNDKYCIGNGGFGSVYRAELPTGLVVAVKRFNISDSSDIPAENRQSFENEIRTLTEVRHRNIIKLYGGFCSSSGRMYLVYEHAKRGSLGKALYDEENMLEMSWPTRVKIVQGIAHAIAYLHTDHSPPVVHRDLTLNNILLDSEFQPRLADFGISKLLSPDSTSWTSVAGSYGYMAPELAQTMRVTVKCDVYSFGVVALEIIMGKHPGDFLATISSMKSVSSMENPQLLKDLIDQRLPPPTGQIAEAVAFVMTIGLACTRTSPESRPSMRTVAQELSSNTRAHLSEPFGVITISNLTGFHK 1228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi11g0770 1228 ProSitePatterns Protein kinases ATP-binding region signature. 935 957 IPR017441 GO:0005524
Glsi11g0770 1228 ProSiteProfiles Protein kinase domain profile. 929 1216 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi11g0770 1228 SUPERFAMILY RNI-like 535 815 - -
Glsi11g0770 1228 PRINTS Leucine-rich repeat signature 705 718 - -
Glsi11g0770 1228 PRINTS Leucine-rich repeat signature 775 788 - -
Glsi11g0770 1228 FunFam Leucine-rich receptor-like protein kinase family protein 406 504 - -
Glsi11g0770 1228 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase At1g17230 534 850 - -
Glsi11g0770 1228 PANTHER LEUCINE RICH REPEAT KINASE 2 535 1209 - -
Glsi11g0770 1228 Pfam Protein tyrosine and serine/threonine kinase 935 1203 IPR001245 GO:0004672|GO:0006468
Glsi11g0770 1228 CDD STKc_IRAK 935 1203 - -
Glsi11g0770 1228 ProSitePatterns Tyrosine protein kinases specific active-site signature. 1056 1068 IPR008266 GO:0004672|GO:0006468
Glsi11g0770 1228 Pfam Leucine Rich Repeat 777 798 IPR001611 GO:0005515
Glsi11g0770 1228 Gene3D Phosphorylase Kinase; domain 1 890 1010 - -
Glsi11g0770 1228 FunFam MDIS1-interacting receptor like kinase 2 1011 1209 - -
Glsi11g0770 1228 SMART LRR_typ_2 654 678 IPR003591 -
Glsi11g0770 1228 SMART LRR_typ_2 122 146 IPR003591 -
Glsi11g0770 1228 SMART LRR_typ_2 702 726 IPR003591 -
Glsi11g0770 1228 SMART LRR_typ_2 316 340 IPR003591 -
Glsi11g0770 1228 SMART LRR_typ_2 534 558 IPR003591 -
Glsi11g0770 1228 SMART LRR_typ_2 485 509 IPR003591 -
Glsi11g0770 1228 SMART LRR_typ_2 195 219 IPR003591 -
Glsi11g0770 1228 SMART LRR_typ_2 98 121 IPR003591 -
Glsi11g0770 1228 SMART LRR_typ_2 775 799 IPR003591 -
Glsi11g0770 1228 SMART LRR_typ_2 437 461 IPR003591 -
Glsi11g0770 1228 Gene3D Ribonuclease Inhibitor 390 460 IPR032675 -
Glsi11g0770 1228 Gene3D Ribonuclease Inhibitor 461 533 IPR032675 -
Glsi11g0770 1228 SUPERFAMILY L domain-like 60 386 - -
Glsi11g0770 1228 FunFam MDIS1-interacting receptor like kinase 2 28 189 - -
Glsi11g0770 1228 Gene3D Ribonuclease Inhibitor 28 189 IPR032675 -
Glsi11g0770 1228 Pfam Leucine rich repeat 680 739 IPR001611 GO:0005515
Glsi11g0770 1228 FunFam MDIS1-interacting receptor like kinase 2 193 386 - -
Glsi11g0770 1228 SUPERFAMILY Protein kinase-like (PK-like) 911 1203 IPR011009 -
Glsi11g0770 1228 Gene3D Ribonuclease Inhibitor 534 854 IPR032675 -
Glsi11g0770 1228 ProSiteProfiles Leucine-rich repeat profile. 704 726 IPR001611 GO:0005515
Glsi11g0770 1228 Pfam Leucine rich repeat N-terminal domain 30 70 IPR013210 -
Glsi11g0770 1228 Gene3D Ribonuclease Inhibitor 190 389 IPR032675 -
Glsi11g0770 1228 FunFam Leucine-rich repeat receptor protein kinase MSP1 893 1010 - -
Glsi11g0770 1228 Gene3D Transferase(Phosphotransferase) domain 1 1012 1214 - -
Glsi11g0770 1228 SUPERFAMILY RNI-like 278 619 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi11g0770 Glsi-ChrGlsi11 4844951 4848745 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi11g0770 1 648 Receptor kinase-like Gene Family AT4G08850 32.412 6.66e-82 288
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Glsi11g0770 PK_Tyr_Ser-Thr 5.3e-43 CL0016