Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi11g0762 ATGGAGGGTAGGATCAGAGAAGATAGGAAAGGCGAATTCAGCGGGGGTATGCGGAAGGTAATGAAGTGCCTATGCTTAGGGAAGGAATCAAGAAGAGCAGATGATATGGTTCCTTCAGCAAGTGGGCTTTCTTGTGAAGCCACGCAAGTTGACAAGAAGCCAGTTACTGGCAACATAGAAGAAGCCGAATCATCACTATGTGAGAGTGGTTGTTTGAACTATGATGATGCTAGAGCCATGTTAGGAAAGCATGAATATGAGAAAGGAAATATAGAAGCCGCCTTATATGTTTTTGAGGGAATAGATATAGGTGCTGTGACTTCCAGGATTAAAATTTCCCTTTCCAGAAGGGGAAAACGCCATAAGAGACATTCCCAGAAATATGCTACACCGGCGATATCTATAAATGCTGTCGGCTTACTGTTGGAAGCACTCTTCCTAAAAGCAAAATCTTTGCAGGTTCTTGGAAGGTTTAAAGAATGCAATCTAATGCGCATATTTCCAATCATTCTTGTAGAAGCTGCCCTATCTTGCAAAGTTATTTTGGACATATTTGAATCTTCATTACCAGAAGGCTTGCCTGAAAACTTCGGTGCTCAAAATAAATTGCAGGAGACTCTGAGAGGGGCAGTTGAGTTGCTTCCTGAATTGTGGAAACTTGCTGATTGTCCACGTGAAGCTATTATGTCTTACCGGCGGGCACTTCTTTATCGGTGGAATCTTGATAGAGAGACTACAGCAAAGATTCAGAAAGAGTTTGCCGTTTTTCTTCTATATAGTGGAGAGGAAGCATGCCCCCCAAGTCTCCGTTCCCAATTTGACGCCTCCTTTGTACCCAGAAACAACTTAGAGGAGGCTATCCTTCTTTTAATGATTCTGCTGAGAAAAGTCTCTCTCAAAAGAATGGAGTGGGATCCTTCAATTTTGGACCACCTTTCTTTTGCTTTATCTGTTTCAGGGGATTTGACAGCGTTGGCCGATCAATTGAAAGAATTGGTCCCCTGCTTTGTCAATCCAAGAGAAAGGTACCATTCTCTTGCCCTGTGTTATTATGGAGCAGGTAAGGAGTTGGTAGCACTGGATCTTATTAGAAAATTGTTGAGTAGTAGAGAGGATCCAAAACATGTTGTAGCTTTGTTATTGGCTTCCAAGATTTGTTGTGAGAACCCTAGTCTTGCAGGGGAAGGAGTACGCTTTGCTTGCAGATTGCTTGAGAACCTGCATGGAAGATGTGATCAATTGGAAAGTCTTGCCAATTGCTTTTTTTCTCTTTCACTTTCAGTACATTCAAAATCAGCCATTTCTGATTCTGAGAGGTTTATGAGACAATCTGAGGCTCTTCACACCCTGGAAATTGCCTGCAGAATGACCAGAATGAGAAACCCCTTAATAGTATACCATCTCAGTTTAGAATATGCAGAACAGAGGAAGTTGGATGCTGCACTTCATTATGCAAAATGCTTTCTAGAACTAGAAGCGGGGTCTAATGTTAAAGGGTGGTTATTGTTAGCCAGAATATTGTCAGCTCAAAATCGGTTTTTGGATGCTGAATCTATTATCGATGCTGCTTTGGATCAGACTGGGAAGTGGGATCAAGGAGAATTGTTGCGAACAAAAGCTAAACTTCAGATTGCGCAGGGCCAGTTAAGGAGTGCCACCGAGACATATGCTCAGCTTCTTGCTGTTCTTAAAATTCAGATTCAAATTTTTGGTTCTGGGAAGAACCTATATAAGGACAGGAGAGATCTTGCTAGGAACTTGGAAATGGAAATATGGCATGATCTTGCTTTCTTATACATAAGCCATTCACGATGGGACGATGCAGAAGTGTGTCTCTCAAAATCAAAGGCCATCAAACTATACTCTGCTTCCAGATGCCATGCAACAGGTGTAATATACGAAGCAAAGGGCCATTATAAGGAGGCTCTAAAAGCCTTTCGCGAGGCTTTGGAGATTGATCCCAAGCATGTGCCGAGCTTGATCTCCACTGCCGTGGTTCTTAGAGGGTGCAGTAATGAATCAAATCCTGTAGGGAGAAGGTTTCTGATGGAAGCACTAGGGCATGACAGAATGAATGGTTCTGCTTGGTATAATCTTGGGCTTGTTTACAAGGCTGAGGGTACAGTATCCTCATTAGCAGAAGCCATGGAATGTTTTGAGGCTGCACAGTTTCTTGAAGAATCTAAACCAGTTGAACCTTTCAGATGA 2208 0.4244 MEGRIREDRKGEFSGGMRKVMKCLCLGKESRRADDMVPSASGLSCEATQVDKKPVTGNIEEAESSLCESGCLNYDDARAMLGKHEYEKGNIEAALYVFEGIDIGAVTSRIKISLSRRGKRHKRHSQKYATPAISINAVGLLLEALFLKAKSLQVLGRFKECNLMRIFPIILVEAALSCKVILDIFESSLPEGLPENFGAQNKLQETLRGAVELLPELWKLADCPREAIMSYRRALLYRWNLDRETTAKIQKEFAVFLLYSGEEACPPSLRSQFDASFVPRNNLEEAILLLMILLRKVSLKRMEWDPSILDHLSFALSVSGDLTALADQLKELVPCFVNPRERYHSLALCYYGAGKELVALDLIRKLLSSREDPKHVVALLLASKICCENPSLAGEGVRFACRLLENLHGRCDQLESLANCFFSLSLSVHSKSAISDSERFMRQSEALHTLEIACRMTRMRNPLIVYHLSLEYAEQRKLDAALHYAKCFLELEAGSNVKGWLLLARILSAQNRFLDAESIIDAALDQTGKWDQGELLRTKAKLQIAQGQLRSATETYAQLLAVLKIQIQIFGSGKNLYKDRRDLARNLEMEIWHDLAFLYISHSRWDDAEVCLSKSKAIKLYSASRCHATGVIYEAKGHYKEALKAFREALEIDPKHVPSLISTAVVLRGCSNESNPVGRRFLMEALGHDRMNGSAWYNLGLVYKAEGTVSSLAEAMECFEAAQFLEESKPVEPFR 735
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi11g0762 735 Gene3D Tetratricopeptide repeat domain 212 587 IPR011990 GO:0005515
Glsi11g0762 735 ProSiteProfiles TPR repeat region circular profile. 623 656 - -
Glsi11g0762 735 SMART tpr_5 497 530 IPR019734 GO:0005515
Glsi11g0762 735 SMART tpr_5 623 656 IPR019734 GO:0005515
Glsi11g0762 735 SMART tpr_5 589 622 IPR019734 GO:0005515
Glsi11g0762 735 SMART tpr_5 693 729 IPR019734 GO:0005515
Glsi11g0762 735 SUPERFAMILY TPR-like 589 707 IPR011990 GO:0005515
Glsi11g0762 735 PANTHER PROTEIN NPG1 22 735 IPR043376 -
Glsi11g0762 735 Gene3D Tetratricopeptide repeat domain 588 731 IPR011990 GO:0005515
Glsi11g0762 735 ProSiteProfiles TPR repeat profile. 623 656 IPR019734 GO:0005515
Glsi11g0762 735 SUPERFAMILY TPR-like 343 615 IPR011990 GO:0005515
Glsi11g0762 735 Pfam Tetratricopeptide repeat 626 656 IPR013105 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi11g0762 Glsi-ChrGlsi11 4817263 4819992 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi11g0762 17 735 Calmodulin-binding Proteins AT4G28600 55.182 0.0 733
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi11g0762 11 4817263 4819992 Glsi02g3003 02 78723161 78729731 CCT