Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi11g0751 ATGGAGGAAGACGAGGACAAAATTTTGCTTAATAGTTTGGGCGTAGAGTCTGCCAATCCTGAATATATTGAACGAGACGTATTAGCTGAGGCAAGGAATGATGTGGTGACCGTCGTTGAAGCTGAAGGGAACTCAAAGGAGGAATTTCCTCAGAAGTCTGTAAATGTCGATCCATCATCTACTAGCAAAGCAGAACTTTATAATAGGTTGAGGGCAGTAGAATTTGAAATAGATGCAGTTGCTTCCACTATCCAACAGGTGAGAAATGTTGAAAGTAATGGAGATTCTAGTGATGCTGGTGATGAAAACTGGGAGCAAGGGACTGCGGAGGATAATTCCTCCAACGATTTGAATCTTCAGCATGTTCTTGCTGCTGATAGGTTAAGAAGCCTAAAGAAGACAAAGGCTCAACTAGAAAAAGAGCTTTCAGGTTTATTCAAGGAGAGCACTTCCAAAAGCATTGATCATGACAAAGTGATCTTTGATTTGGTTAAGGAAGAGCCAAGATCCAAGAGGAAGCTCAAAGAAGTTAAAAAATTACCCAAAAGCTCAGGAAAACGGCATAAAACAGTCTCATTCAAGGATGATGTTGATTTTGATGCAGTTCTGGATGCAGCCTCTGCAGGCTTTGTTGAAACAGAAAGGGACCAATTGGTGAGGAAAGGACTTTTAACCCCTTTTTCTAACCTGAAGGGCTTTGAGCGCCGCTTTCAACAATCAGAAACATCTAGTAGTTATAATGCAAGCAAGGAAGAAGAAACTGATGATCTTGCTTCTTCTACTGTTGAAAGAGCTGCCAGATCGATATCTGAGGCGGCAAGAGCTCGCCCAACTACCAAACTCCTTGAGTCTGAAGCTCTGCCAAAACTTGATGCACCCACTCGCCCCTTTTACAGACTCAGGATGCCACTAAAACTACCTCAATCTCTAGAAAGAGAGGTAGAGAAGGATAAAATTTCAAAGAGGCGAAAAAGGCGACCTTTGCCTAGTAGGAAATGGACAAAGTGTGTTTCTAGCGAGGAATTACTTTTGAGAGAGACTGTTGTTGCATGCTTTTCAGAAGATGCAAGTGGTTTGGATACTTCCAGTTGTGAAAATTTAGAGGCACAAGATGTTGAACTTGCTGATCATCAACTTTCTTATGTAACATTAGAAGGTGGGTTGAAAATCCCGGATAAGGTTTTCGAAGCACTATTTGACTATCAAAAGGTTGGTGTTCAATGGCTGTGGGAATTGCATTGCCAAAGGGCTGGTGGAATTATTGGTGATGAGATGGGTCTTGGTAAAACCATCCAGATCTTATCTTTTCTTGGTGCATTGCATTTCAGTGGCATGTATAAACCAAGCATCATTGTTTGTCCTGTTACACTCTTGCGACAGTGGAAAAGGGAAGCTCAAAAGTGGTACCCAAAATTTCATGTAGAGATTTTACATGATTCTGCTCAAGATCCTGCAGCTAGAAAGAAGCAATCCAAATCTGATGAAACAGACTGTGAAAGTACTAGTTCAATTGACAGTGATTATGAAAGTAATATACAATCGAGAAACACAAGAAAATGGGAATCCCTGATAAGTCATTTCATGAGATCTGAATCTGGGTTGCTTATCACCACATATGAGCAGCTCAGAATATTGAGAGACCTCTTGCTTGACATTGAATGGGGTTATGCAGTTCTTGATGAAGGGCACAGAATAAGAAATCCAAATGCTGAAGTTACCCTAGTTTGCAAACAGCTACAGACAGTACACCGCATCATAATGACTGGTGCACCTATTCAGAACAAACTGACTGAACTGTGGTCATTGTTTGATTTTGTTTTCCCTGGAAAATTAGGTGTTTTGCCTGTATTTGAAGCTGAGTTTGCAGTTCCTATAGCAGTTGGTGGATATGCAAATGCTTCACCATTACAAGTATCAACAGCATACAGGTGTGCTGTTGTGCTGCGTGATTTAATCATGCCTTATCTTCTCCGGCGCATGAAGGCTGATGTAAATGTCCAACTTCCAAAAAAGACTGAGCATGTTCTATTCTGCAGCCTTACATCAGAGCAAGTATCTACTTATAGAGCATTTTTAGCAAGCACTGAAGTGGAGCAAATTATGGATGGACGCAAGAATTCTCTTTATGGAATTGATGTGATGCGTAAAATATGCAACCACCCTGACCTGCTTGAAAGGGAACAGGCCTTCACGAATCCTGATTATGGAAATCCAGAACGTAGTGGAAAAATGAAAGTTGTAGCACAAGTGCTCAATGTTTGGAAGGAGCAAGGTCACCGTGTTCTTCTTTTTACTCAAACCCAACAAATGCTTGACATTTTTGAGAAATTTTTGACTACTTTTGGTCATAATTATCGGAGAATGGACGGTGTCACTCCTGTAAAACAAAGAATGGCCTTAATAGACGAATTTAATGCCTCAAGCGAGGTATTTATTTTCATTTTAACAACCAAAGTTGGGGGTTTGGGAACGAATCTTACTGGTGCAGACAGGGTGATTATCTTTGACCCTGATTGGAATCCTTCAACTGACATGCAGGCCAGAGAACGTGCTTGGCGTATTGGTCAGAAACGGGATGTGACGGTGTATAGGTTGATCACACGTGGAACTATAGAAGAGAAAGTATATCACCGTCAGATCTACAAACACTTTCTTACCAATAAGATATTGAAGAACCCACAACAGAAAAGATTCTTTAAAGCTCGAGATATGAAAGATCTTTTCACCCTTAATGTGGATGGAGAAACTGGATCAACTGAAACGTCAACTATTTTCGGTCAAATAGCTGAAGAAGTAAATATTGTCAGGACACATGAAGATAAGCAGGACAAGGGTAAACATGCCCAAACTACTGAAACGGGCTCTTATGATGTTGCAGTTGATAATGACGGCAGATCAGAGACAGGACCACTAGGGAAAAAGGGGAAAGAGAAAATTGATCATCGTGATGAGGTAGATGAGGAAACAAATATATTGAACAGTCTTTTTGATGCCCACGGGATACATAGTGCTGTGAACCATGATTTAATCATGAATGCCCATGATGAGGAAAAGATGAGGCTTGATGAGCAAGCTTCCCAGGTTGCACAGAAAGCTGCAGAAGCTTTACGTCAGTCACGAATGCTCCGAAGTTGTGACAGCTTCTCTGTTCCTACATGGACAGGAAGGTCAGGAACTGCTGGTGCACCATCATCTGTTCGGCGGAAGTTTGGTTCAACCGTGAATGCCCAGTTGACAAATAATTGCAAAGTATCAGATGAATTACCAAACAATGGAACTAACAAATTTAATGGATTTGCTGCTGGGGCATCTTCTGGGAAGGCATTGTCTTCAGCTCAAATTTTGTCTCGAATACGAGGTAACCAAGAAAAAGCCATTGGTGCGGGGCTAGAACATCAGTTTGGTCTGGCTTCAAACTCTTCTAATCAAGTAAGATCTACAAGTGTTGGATCTTCTAGGGCTTCTGCTGGAGTGCAACCTGAAGTATTGATTCGGCAAATCTGTACATTTCTACAAGAGAGGGGTGGTAGTTCCAATTCATCCAGCATAGTACAGCATTTTAAGGACAGGATCCCCTCAACGGATCTCGCCCTATTCAAGAATCTGTTAAAGGAAATAGCAATTCTGGAAAAAGGACCAAATGGATCGAATTGGGTTTTGAAGGCAGACTATCAAGAATAA 3681 0.4127 MEEDEDKILLNSLGVESANPEYIERDVLAEARNDVVTVVEAEGNSKEEFPQKSVNVDPSSTSKAELYNRLRAVEFEIDAVASTIQQVRNVESNGDSSDAGDENWEQGTAEDNSSNDLNLQHVLAADRLRSLKKTKAQLEKELSGLFKESTSKSIDHDKVIFDLVKEEPRSKRKLKEVKKLPKSSGKRHKTVSFKDDVDFDAVLDAASAGFVETERDQLVRKGLLTPFSNLKGFERRFQQSETSSSYNASKEEETDDLASSTVERAARSISEAARARPTTKLLESEALPKLDAPTRPFYRLRMPLKLPQSLEREVEKDKISKRRKRRPLPSRKWTKCVSSEELLLRETVVACFSEDASGLDTSSCENLEAQDVELADHQLSYVTLEGGLKIPDKVFEALFDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQILSFLGALHFSGMYKPSIIVCPVTLLRQWKREAQKWYPKFHVEILHDSAQDPAARKKQSKSDETDCESTSSIDSDYESNIQSRNTRKWESLISHFMRSESGLLITTYEQLRILRDLLLDIEWGYAVLDEGHRIRNPNAEVTLVCKQLQTVHRIIMTGAPIQNKLTELWSLFDFVFPGKLGVLPVFEAEFAVPIAVGGYANASPLQVSTAYRCAVVLRDLIMPYLLRRMKADVNVQLPKKTEHVLFCSLTSEQVSTYRAFLASTEVEQIMDGRKNSLYGIDVMRKICNHPDLLEREQAFTNPDYGNPERSGKMKVVAQVLNVWKEQGHRVLLFTQTQQMLDIFEKFLTTFGHNYRRMDGVTPVKQRMALIDEFNASSEVFIFILTTKVGGLGTNLTGADRVIIFDPDWNPSTDMQARERAWRIGQKRDVTVYRLITRGTIEEKVYHRQIYKHFLTNKILKNPQQKRFFKARDMKDLFTLNVDGETGSTETSTIFGQIAEEVNIVRTHEDKQDKGKHAQTTETGSYDVAVDNDGRSETGPLGKKGKEKIDHRDEVDEETNILNSLFDAHGIHSAVNHDLIMNAHDEEKMRLDEQASQVAQKAAEALRQSRMLRSCDSFSVPTWTGRSGTAGAPSSVRRKFGSTVNAQLTNNCKVSDELPNNGTNKFNGFAAGASSGKALSSAQILSRIRGNQEKAIGAGLEHQFGLASNSSNQVRSTSVGSSRASAGVQPEVLIRQICTFLQERGGSSNSSSIVQHFKDRIPSTDLALFKNLLKEIAILEKGPNGSNWVLKADYQE 1226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi11g0751 1226 PANTHER SNF2/RAD54 FAMILY MEMBER 171 1204 - -
Glsi11g0751 1226 MobiDBLite consensus disorder prediction 238 286 - -
Glsi11g0751 1226 SMART ultradead3 394 617 IPR014001 -
Glsi11g0751 1226 Pfam Helicase conserved C-terminal domain 748 855 IPR001650 -
Glsi11g0751 1226 CDD DEXHc_ERCC6 398 608 - -
Glsi11g0751 1226 MobiDBLite consensus disorder prediction 89 117 - -
Glsi11g0751 1226 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 746 905 IPR001650 -
Glsi11g0751 1226 Gene3D - 368 658 IPR038718 -
Glsi11g0751 1226 SMART helicmild6 772 855 IPR001650 -
Glsi11g0751 1226 Coils Coil 121 148 - -
Glsi11g0751 1226 Coils Coil 1018 1038 - -
Glsi11g0751 1226 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 661 918 IPR027417 -
Glsi11g0751 1226 FunFam DNA excision repair protein ERCC-6 666 944 - -
Glsi11g0751 1226 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 382 659 IPR027417 -
Glsi11g0751 1226 MobiDBLite consensus disorder prediction 967 984 - -
Glsi11g0751 1226 Pfam SNF2-related domain 401 723 IPR000330 GO:0005524|GO:0140658
Glsi11g0751 1226 Gene3D - 665 955 IPR027417 -
Glsi11g0751 1226 FunFam Protein CHROMATIN REMODELING 8 376 658 - -
Glsi11g0751 1226 CDD SF2_C_SNF 741 866 - -
Glsi11g0751 1226 CDD CSB_WHD 1156 1225 - -
Glsi11g0751 1226 MobiDBLite consensus disorder prediction 483 499 - -
Glsi11g0751 1226 MobiDBLite consensus disorder prediction 483 510 - -
Glsi11g0751 1226 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 410 609 IPR014001 -
Glsi11g0751 1226 Coils Coil 1222 1226 - -
Glsi11g0751 1226 MobiDBLite consensus disorder prediction 937 984 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi11g0751 Glsi-ChrGlsi11 4754463 4760723 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi11g0751 391 908 RAD5 or RAD16-like Gene Family AT1G02670 23.618 1.74e-24 108
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Glsi11g0751 SNF2_N 6.5e-62 CL0023
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi11g0751 11 4754463 4760723 Glsi11g0751 11 4754463 4760723 ECH