Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi11g0745 ATGGTTGGGGTGTTAAAGCGTTTGAAATCAGTGCTTGATGAAGTTATAGATTGCAAAGTCCCTTTAGATGAAAATCTATGCAGAGAATGTGAAGAGCTGGATAGGGCTGTTAATGAAGCTAGAGATTTCATGGAAAAATGGAGCCCGAAGAGGAGCAAGATTCATGGCCTTCTACAAAGTGGGGCGTTGTTGATGAAAATGCAGAGCTCTTCACTGGAGATTTTTCACATGATATTTAGATCCCTACAGTCATCTCCATCTACTTCAGTTCTGGTTAGTCCTCAGGAACTTCAGTGTTTGAAGAACGAACCAATGACAGTCTATATAAAAGAGGCGCTGAGATATCAAACAGAAAATAGTGAACCTTGCAATGAAAATCTAAAGAAAATTATTGAGTTACGTAGGTTGACATCGAACCAGGAACTCTTGAAAGAAAGTATTGCTGTGGAAAAGGAAAGATTGAATGCTGAAGTCAATAAAATGGAAGGGGAAATTGATGAAATTAACCAAATTGTAAATCTTGTCAGCAATATACGTGATTATGTAATGAAAATTGAATGTCCTGAAGTAAAAAGTGGTGTGCTTATCTCATCATATTTCCTCTGTCCTTTATCATTGGAACTCATGTCGGATCCTGTTATCGTGGCATCGGGTCAGACATACGATAGGCTGTCCATTCAAAAGTGGCTTGATCATGGACTGTCTGTTTGTCCCAAGACTCGTCTGAGACTTACTCATACAAATGTCACTCCCAATTATACTGTCAAATCTATGATAGCAAATTGGTGTAAGGAAAATGATTTCAAACGTCCCAGTAAATCTGATAAAAATAATTTTGTCCGCATCACACCCCCCCTGCCTCAAGATTTAGCATGTAATCATAGTTCTGGATCATTATATAGTGGCAAATCAACATCAAGATCATCTCTCCAAACTGGAAATGCATTTGAGAATCAAAAAGGTGATATTTCTTCCAGATTGAGTGGAGAATTCAATGGATGCCAAAGCGGAGACACAGAGAAGTATGAACAACAATCCCCTGCACCTTCATATATTTATAGCAGAAGTGAGTCATTCTCAATTTCTATTTCCAATACTGATGATTTAATTCCAGTTTCAAAAGAGGTGCCAGGGGTATCCAATAACCATGAAATTATCAAGGAGATGTCTAGAGGAATTACAAATAGGTGTCCTCCTCAGTTATCAGGTAGGCAATTTCAAAGCCCAGGATCAGAAAACAGAGGAATAGATCGTGGAAATAATAGTTGTAATAATTCTCATTCAAGAGTGCATTCCCTTCCTTGTTATAACTTGGGATCTGATGATTTGACCACAACATTTCATGTCAACAAGTTGATTGAAGACCTTCGTAGCCAATCAAATGAGGTGCAGACTAGGGCTGCAGAAGAATTAAGGCTCCATACAAAGCACAATATGGAAAACCGTATTATTATAGGGCAGCGTGGGGCTACTGTTCCTTTACTTTCACTGCTATTTTCAGATGTGAAGATAACACAAGAGCATGCTGTGACAGCTCTGCTGAATTTGTCAATTAATGATGACAACAAGGCCTTGATTGTGGAAGCAGGAGCGATAGAACCACTTATTCATGTTTTGAAAACAGGAAATGATGGAGCCAAGGAGAATTCGGCTGCATCTCTATTCAGCCTCTCTTTAGTAGAAAACAACAAAGAAAAAATAGGTCGTTCTGGTGCTGTCAATGCTTTGGTGGATCTTCTAGGATCAGGAACTCTTAGAGGAAAGAAGGACGCTGCTACTGCTTTGTTTAACCTATCAATATATCATGAGAATAAAGCTCGAGTAGTTCAAGCTGGAGCAGTGAAGTTTCTTGTTCAGTTAATGGACAATACTGCTGTAATGGTTGACAAAGCTGTTGCTCTTCTGGCAAACCTATCAACAATTGCAGAGGGGCGATTAGAAATTGCTAGGGAAGGGGGCATCCCCCTACTAGTTGAAATTGTTGAATCAGGTTCGCAGAGGGGAAAGGAAAACGCTGCCTCCATTCTCTTGCAACTATGCCTTCACTACAGTCCCAAGTTTTGTACCCTAGTTCTGCAAGAAGGAGCCGTACCTCCCTTAGTTGCATTATCTCAATCCGGCACACCAAGAGCAAAAGAGAAGGTACCAAGCTTGTCATCCTTCTCAGGTGTTAAATTTCTGATTGTGTGCATACACCAGTCAGTTTTGCTTTCGAAGGAGTATTGA 2226 0.3989 MVGVLKRLKSVLDEVIDCKVPLDENLCRECEELDRAVNEARDFMEKWSPKRSKIHGLLQSGALLMKMQSSSLEIFHMIFRSLQSSPSTSVLVSPQELQCLKNEPMTVYIKEALRYQTENSEPCNENLKKIIELRRLTSNQELLKESIAVEKERLNAEVNKMEGEIDEINQIVNLVSNIRDYVMKIECPEVKSGVLISSYFLCPLSLELMSDPVIVASGQTYDRLSIQKWLDHGLSVCPKTRLRLTHTNVTPNYTVKSMIANWCKENDFKRPSKSDKNNFVRITPPLPQDLACNHSSGSLYSGKSTSRSSLQTGNAFENQKGDISSRLSGEFNGCQSGDTEKYEQQSPAPSYIYSRSESFSISISNTDDLIPVSKEVPGVSNNHEIIKEMSRGITNRCPPQLSGRQFQSPGSENRGIDRGNNSCNNSHSRVHSLPCYNLGSDDLTTTFHVNKLIEDLRSQSNEVQTRAAEELRLHTKHNMENRIIIGQRGATVPLLSLLFSDVKITQEHAVTALLNLSINDDNKALIVEAGAIEPLIHVLKTGNDGAKENSAASLFSLSLVENNKEKIGRSGAVNALVDLLGSGTLRGKKDAATALFNLSIYHENKARVVQAGAVKFLVQLMDNTAVMVDKAVALLANLSTIAEGRLEIAREGGIPLLVEIVESGSQRGKENAASILLQLCLHYSPKFCTLVLQEGAVPPLVALSQSGTPRAKEKVPSLSSFSGVKFLIVCIHQSVLLSKEY 741
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi11g0745 741 CDD RING-Ubox_PUB 198 247 IPR045210 -
Glsi11g0745 741 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 612 653 IPR000225 GO:0005515
Glsi11g0745 741 FunFam RING-type E3 ubiquitin transferase 196 267 - -
Glsi11g0745 741 SUPERFAMILY ARM repeat 448 714 IPR016024 -
Glsi11g0745 741 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 196 270 IPR013083 -
Glsi11g0745 741 Coils Coil 144 171 - -
Glsi11g0745 741 SMART Ubox_2 199 262 IPR003613 GO:0004842|GO:0016567
Glsi11g0745 741 Gene3D - 446 521 IPR011989 -
Glsi11g0745 741 ProSiteProfiles U-box domain profile. 195 269 IPR003613 GO:0004842|GO:0016567
Glsi11g0745 741 Pfam Armadillo/beta-catenin-like repeat 519 558 IPR000225 GO:0005515
Glsi11g0745 741 Pfam Armadillo/beta-catenin-like repeat 563 599 IPR000225 GO:0005515
Glsi11g0745 741 PANTHER U BOX DOMAIN-CONTAINING 24 718 - -
Glsi11g0745 741 FunFam RING-type E3 ubiquitin transferase 434 725 - -
Glsi11g0745 741 SMART arm_5 478 518 IPR000225 GO:0005515
Glsi11g0745 741 SMART arm_5 601 640 IPR000225 GO:0005515
Glsi11g0745 741 SMART arm_5 519 559 IPR000225 GO:0005515
Glsi11g0745 741 SMART arm_5 641 681 IPR000225 GO:0005515
Glsi11g0745 741 SMART arm_5 560 600 IPR000225 GO:0005515
Glsi11g0745 741 MobiDBLite consensus disorder prediction 395 425 - -
Glsi11g0745 741 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 489 531 IPR000225 GO:0005515
Glsi11g0745 741 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 571 613 IPR000225 GO:0005515
Glsi11g0745 741 MobiDBLite consensus disorder prediction 394 425 - -
Glsi11g0745 741 SUPERFAMILY RING/U-box 196 271 - -
Glsi11g0745 741 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 530 572 IPR000225 GO:0005515
Glsi11g0745 741 MobiDBLite consensus disorder prediction 318 349 - -
Glsi11g0745 741 Pfam U-box domain 197 266 IPR003613 GO:0004842|GO:0016567
Glsi11g0745 741 Gene3D - 629 718 IPR011989 -
Glsi11g0745 741 Gene3D - 522 628 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi11g0745 Glsi-ChrGlsi11 4702346 4705013 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi11g0745 13 720 U-box Gene Family AT3G54790 52.974 0.0 636