Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi11g0740 ATGGTGAGAGCTCCTTGCTGCGAGAAAATGGGTTTGAAGAAAGGGCCATGGGCTCCGGAGGAAGATCACATACTCATCAACTATATCCGAACACATGGTCACAGTAATTGGCGAGCACTTCCCAAACAAGCTGGGCTGTTAAGGTGCGGAAAGAGTTGTAGACTCAGGTGGACAAATTATTTGAGGCCAGATATCAAACGGGGAAACTTTACCAGAGAAGAAGAGGACAGCGTAATCAAGTTGCACGAAATGTTGGGAAACAGATGGTCAGCTATTGCAGCGAGGTTACCGGGACGCACAGACAATGAGATAAAAAATGTTTGGCACACCCACTTGAAGAAGAGGCTCCCACAAAACAGACAGAAACACGACAGAAAACCAAATCCAAAACAAATGGGGGACTCCTGCAAACCCTACCAAGACGCCACAAAAGAACAAGACCCCGTGAGTTTTTCAACTCATCATGTGAAAGCAGAAAGCAGTACGGACCATAGGCCACCGTCCCCGCCACAATGTTCTAGTGACATGTCCACCCTCACCACAAGTAGCATTACAACTAATGACATGTTCAATTCAAATGTTGAAACGCTGACTGAAAATATTGAGGCATTGGACGAGGATTTCTGGTCGGAAGTGCTGTCAACTGATAATTCCGGTGAGACCAGCGAATTTCCAGCCCTTGGTGCTGCTCATCAACAGCTTCAATTCCCATTCTCTCCACTAGTAACTGCCGAACAAGACCATACCACTAATACATCTAGTATATGCGATAGCACTAGCATGGACTTTTGGTATGATGTTTACACCAAAGTTGAGGGATTAACAGAGTTACCACAATTATGCTACCCTTCACGTCAACAATCACCTATAGCCCTAATACTTTATGAATCACGACTAGGATTAGCCACGGACTCATTCCTTTCATTCAATACCGCAAGACATCCCTGAGGAAAGAAAGATACGAGGTGTGAATTGCAAGACCACATTGGGCCATCGAAATGGCTTAAGATCACTGCTGTTGGTTCTCTTTTGCTCACTCTTGTTCGTCTTCTCTATCTTCAGATTTTCCTTCTTATATTTCTGAGTCTGAGTTATTGGAGCATCCGTTCAAAGCCAAATTATGGCGACTGCCTCAGGGAGGACCATTGCAAACAAATTGGGTCGGAAGAAGCACGTAAGGCTGGGCCAGCGCCTGCTGAGGTTGATGAAGATGGCAAAGAAATTAACCCTCACATTCCCGAGTATACGTGGTCTGCTCCTTGCTGTGGAGCTGTGACACACGATGTTAAGTCATGCATGGAGAGACCACAGAAAGTGGGAGCTGGGTGGACAAACAAGCACATTGCCCCTGATGAAAAGATAGAAACTTTTGAGCTTGACTATGATAGCAAACAGGACAGATGGAATGGCTATGATACTTCAACTTATGCCCGAGTCGTTGAGAGGTATGAAGCTAGAGATGAACCTCCAAAAGTCAGTGATGAGGATGAAGAGGAAGATGATCTAAGGGCAGATGAGGCAAAAGTTGATGAGAGCAAGAATCTACGTATTCGAGAGGATACTGCAAAATATATTCTAAATCTCGATGTCAATTCTGCACACTATGAACCCAAAATCAGGTCTATGCATGAGGATCCTCTTCCGGATGCAGATCCAGATGAGAGGTTTTATGAGTCTCAAACAAAGGAAACAATTGCGGAGAAGTATGGCAAGGCAGCCAATGAGGACGAACCTCCAAGAGAACTGCTGCTGGGTCGAAGTGAGAGGCAAGTTGAGTATGATCGTGGTGAGATTCATACACCGGTGGAGGAGAGGAAGCTAGCTACATGGGTTACTGATGTCCCAGATGACCTGGTTCTGGATGAGAAATTGCTTGTTGAAGCATTGAAGAAGGCGGATCAACGAAAGAGAGAAGAGAAAGATGATAGGAAGCGAAAATACAATGTCAGATGGAATGATGAGTTTTGA 1968 0.4507 MVRAPCCEKMGLKKGPWAPEEDHILINYIRTHGHSNWRALPKQAGLLRCGKSCRLRWTNYLRPDIKRGNFTREEEDSVIKLHEMLGNRWSAIAARLPGRTDNEIKNVWHTHLKKRLPQNRQKHDRKPNPKQMGDSCKPYQDATKEQDPVSFSTHHVKAESSTDHRPPSPPQCSSDMSTLTTSSITTNDMFNSNVETLTENIEALDEDFWSEVLSTDNSGETSEFPALGAAHQQLQFPFSPLVTAEQDHTTNTSSICDSTSMDFWYDVYTKVEGLTELPQLCYPSRQQSPIALILYESRLGLATDSFLSFNTARHPXGKKDTRCELQDHIGPSKWLKITAVGSLLLTLVRLLYLQIFLLIFLSLSYWSIRSKPNYGDCLREDHCKQIGSEEARKAGPAPAEVDEDGKEINPHIPEYTWSAPCCGAVTHDVKSCMERPQKVGAGWTNKHIAPDEKIETFELDYDSKQDRWNGYDTSTYARVVERYEARDEPPKVSDEDEEEDDLRADEAKVDESKNLRIREDTAKYILNLDVNSAHYEPKIRSMHEDPLPDADPDERFYESQTKETIAEKYGKAANEDEPPRELLLGRSERQVEYDRGEIHTPVEERKLATWVTDVPDDLVLDEKLLVEALKKADQRKREEKDDRKRKYNVRWNDEF 655
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi11g0740 655 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Glsi11g0740 655 CDD SANT 69 112 IPR001005 -
Glsi11g0740 655 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Glsi11g0740 655 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Glsi11g0740 655 SMART sant 13 63 IPR001005 -
Glsi11g0740 655 SMART sant 66 114 IPR001005 -
Glsi11g0740 655 CDD SANT 16 61 IPR001005 -
Glsi11g0740 655 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 222 - -
Glsi11g0740 655 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Glsi11g0740 655 MobiDBLite consensus disorder prediction 389 409 - -
Glsi11g0740 655 MobiDBLite consensus disorder prediction 106 191 - -
Glsi11g0740 655 SUPERFAMILY Homeodomain-like 10 108 IPR009057 -
Glsi11g0740 655 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Glsi11g0740 655 Coils Coil 187 207 - -
Glsi11g0740 655 Gene3D - 69 137 - -
Glsi11g0740 655 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Glsi11g0740 655 MobiDBLite consensus disorder prediction 148 162 - -
Glsi11g0740 655 MobiDBLite consensus disorder prediction 542 588 - -
Glsi11g0740 655 FunFam MYB-related transcription factor 13 66 - -
Glsi11g0740 655 Pfam Pre-mRNA splicing Prp18-interacting factor 459 507 IPR021715 -
Glsi11g0740 655 Pfam Pre-mRNA splicing Prp18-interacting factor 495 555 IPR021715 -
Glsi11g0740 655 MobiDBLite consensus disorder prediction 164 191 - -
Glsi11g0740 655 MobiDBLite consensus disorder prediction 483 503 - -
Glsi11g0740 655 FunFam Transcription factor MYB15 68 142 - -
Glsi11g0740 655 Gene3D - 11 67 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi11g0740 Glsi-ChrGlsi11 4660066 4669056 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi11g0740 1 280 MYB Transcription Factor Family AT2G31180 48.601 3.20e-79 250
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Glsi11g0740 Slu7 9.7e-18 No_clan