Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi11g0734 ATGGATTTACATTCTTCCCTCTTCGAAAACCAAAACCGAAACCTTGAGTCTTGTCCTTCGAATTCCTCCGTTTCTGGAGACTCATTCTCCTGGGAAGAGTTCTTTGACTTCAACTTGAATGATTATTCACATACCAAAGAATTATCATCCTCGGAATCCAATTCCTCTTCTTGTGTGGAGTCACAAGAAGTCTCCTCCCAACCCAAAGAGAACCGGCCGTACAGAGGAGTGAGGAGGCGGCCATGGGGGAAATACGCGGCGGAGATAAGGGACTCCACCAGAAATGGGGTTAGAGTGTGGATTGGAACATTTGACACTGCTGAGGCTGCTGCTTTAGCTTATGATCAAGCTGCTTTCTCCATGAGGGGTTCCCTTGCGGTCCTTAATTTCCCAGAGAAAGTGGTGAGGGAGTCCCTCCAAGACATGGCAAGTAAGCCATGGGAAGATGGATCCTCCCCAGTGTTGGCACTCAAAAGAAAGCACACCATGAGAAGAAGGTCCAAGCCTTCTAATAAAAAGCCTAGAAGGGATTGCAGGGAGTTGCAGACTTCCCAAGATAATGTGCTGGTTTTGGAGGATTTGGGTACTGAATATCTGGAGCAGCTTTTGAGCTTGACTTCTTCTGAAATTGTATACTAG 639 0.4679 MDLHSSLFENQNRNLESCPSNSSVSGDSFSWEEFFDFNLNDYSHTKELSSSESNSSSCVESQEVSSQPKENRPYRGVRRRPWGKYAAEIRDSTRNGVRVWIGTFDTAEAAALAYDQAAFSMRGSLAVLNFPEKVVRESLQDMASKPWEDGSSPVLALKRKHTMRRRSKPSNKKPRRDCRELQTSQDNVLVLEDLGTEYLEQLLSLTSSEIVY 212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi11g0734 212 MobiDBLite consensus disorder prediction 46 69 - -
Glsi11g0734 212 ProSiteProfiles AP2/ERF domain profile. 73 131 IPR001471 GO:0003700|GO:0006355
Glsi11g0734 212 MobiDBLite consensus disorder prediction 160 179 - -
Glsi11g0734 212 Gene3D AP2/ERF domain 73 133 IPR036955 GO:0003700|GO:0006355
Glsi11g0734 212 PRINTS Ethylene responsive element binding protein signature 74 85 IPR001471 GO:0003700|GO:0006355
Glsi11g0734 212 PRINTS Ethylene responsive element binding protein signature 97 113 IPR001471 GO:0003700|GO:0006355
Glsi11g0734 212 CDD AP2 74 132 IPR001471 GO:0003700|GO:0006355
Glsi11g0734 212 SUPERFAMILY DNA-binding domain 74 132 IPR016177 GO:0003677
Glsi11g0734 212 MobiDBLite consensus disorder prediction 46 77 - -
Glsi11g0734 212 FunFam Ethylene-responsive transcription factor 2 72 132 - -
Glsi11g0734 212 Pfam AP2 domain 74 123 IPR001471 GO:0003700|GO:0006355
Glsi11g0734 212 PANTHER DNA-BINDING DOMAIN 38 204 IPR044808 GO:0003700|GO:0009873
Glsi11g0734 212 SMART rav1_2 73 137 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi11g0734 Glsi-ChrGlsi11 4631931 4632569 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi11g0734 32 203 AP2-EREBP Transcription Factor Family AT3G23240 56.069 2.22e-55 174
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Glsi11g0734 AP2 5.4e-15 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi02g1869 02 66824296 66825000 Glsi11g0734 11 4631931 4632569 CCT
Glsi11g0734 11 4631931 4632569 Glsi11g0734 11 4631931 4632569 ECH