Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi11g0731 ATGGCGCTCCATCAGAACCGCTCGTACAAACTTGGATATCAACCTCCCTCTCCCATAAAAAGCCAGCCTGCTTCGGACTCTGCTTTACCAGTATTTGCCATTGTTGTGCTCAGCATCGTGGCCACTGCTTTCTTGCTCATCGCCTACTTCACTTTTGTCACCAAATTTTGTTCCAACTGGCATCAAGTTAACCCATTCAGATGGCTTTCCATCCTCCGTGCAAGACACACCCAAGATCCCTTCATTGCTTTGTCTCCCACCGTGTGGAATCGCGGGCTCGATGAATCGATCATCCGAGAAATACCCACATTCCAGTTCATGAAAGGAGTTGGCGAGGATCAGAGTGTGTATGGCTGCGTGGTTTGTTTGACTGAGTTTCAAGAACAGGATATGCTGAAAATGCTACCCAATTGCAGCCATGCTTTTCACTTGGATTGCATTGACATTTGGCTTCAGAGCAATGCCAATTGCCCTCTTTGTAGATCAAGCATTTCGGGCACCACTCGTTGTCCAATGGACCATATCGTAGCGCCAAGCTCCTCTCCCCAAGATTCTCAGTTCATCTCTAACATGGGCAGCGATGAAGATTTTGTGGTGATCGAATTGGGGGGAGAACATGGGGGAACATTATCAAGAGACGATTCAAGGGGAAGCTTAGAACAGAGTAGAAGTCACTCTACGAGGAAGATGGAGCATAAGCTTGGGTATTTCAAACCAAGGAAGTGTCACCATGTTTCCATCATGGGAGATGAGTGTATTGATGTCAGGAAGAAAGATGAGCAGTTTTCAATTCAACCCCTTCGAAGATCTTTCTCAATGGACTCTGCAAATGATAGACAAGTTTACTTAGATGTTCAGGCCATTACACAACAGAACAGGCATCAAAACGAGGCTAGTGCCAGTGAAGATAGTAATAGCAGAGGTCGAAGGTCGTTCTTTCCATTCCGTTATGGGCGGGCGTCCAAAAATGCAGTGCTTCCTCTGGAGAATGACGTTTGA 999 0.4645 MALHQNRSYKLGYQPPSPIKSQPASDSALPVFAIVVLSIVATAFLLIAYFTFVTKFCSNWHQVNPFRWLSILRARHTQDPFIALSPTVWNRGLDESIIREIPTFQFMKGVGEDQSVYGCVVCLTEFQEQDMLKMLPNCSHAFHLDCIDIWLQSNANCPLCRSSISGTTRCPMDHIVAPSSSPQDSQFISNMGSDEDFVVIELGGEHGGTLSRDDSRGSLEQSRSHSTRKMEHKLGYFKPRKCHHVSIMGDECIDVRKKDEQFSIQPLRRSFSMDSANDRQVYLDVQAITQQNRHQNEASASEDSNSRGRRSFFPFRYGRASKNAVLPLENDV 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi11g0731 332 SMART ring_2 119 160 IPR001841 -
Glsi11g0731 332 FunFam E3 ubiquitin-protein ligase ATL6 84 167 - -
Glsi11g0731 332 Pfam Ring finger domain 119 161 IPR001841 -
Glsi11g0731 332 ProSiteProfiles Zinc finger RING-type profile. 119 161 IPR001841 -
Glsi11g0731 332 MobiDBLite consensus disorder prediction 291 308 - -
Glsi11g0731 332 SUPERFAMILY RING/U-box 114 165 - -
Glsi11g0731 332 CDD RING-H2_EL5-like 119 161 - -
Glsi11g0731 332 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 85 166 IPR013083 -
Glsi11g0731 332 MobiDBLite consensus disorder prediction 208 230 - -
Glsi11g0731 332 PANTHER RING-H2 FINGER PROTEIN ATL16 14 329 IPR044600 GO:0016567|GO:0016740
Glsi11g0731 332 MobiDBLite consensus disorder prediction 291 310 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi11g0731 Glsi-ChrGlsi11 4620120 4621118 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi11g0731 24 294 C3H Transcription Factor Family AT1G04360 46.535 1.07e-78 243