Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi11g0727 ATGATAGAGGTTGATTGCCAAATGAAGAAACTTGGCCAGCTCTCCCTTTGCGTTTGTGAATCCTTCAAAAGCAAAGTTCGAAGCTTGGGTCTTGGGGTATTGGAATTCGTGCTTGTTGTGAGTAATGGGTACGGATCATCTGCTATTGCCAACAGTTGGACCGCCATTAAAACGGCGAGCAGGATTGCGGAGGAAGCAGGCTGGAAGAGGATCTTACAGGGGAAGCTAGGGCAAGGGGATTATAGGGAATTGGAGGGCATGCATCAAGCACTCAGAAGCCTCTGTTTCAATACTGATTGGAATTACGCCATCTTTTGGAAACTCAAACATCGTGCTCGCATGATCTTGACATGGGAGGATGCTTACTATGATAATCCCGATTACTATGACTCTTTAGAGAATAAGTGCAACCAGAAGACCTTGGAACAAATTCGTGGTGGCCATTTTTCACATGACCCTCTTGGGTTGGCAGTGGCAAAGATGTCATATCATGTATATTCGTTAGGGGAAGGTATTGTTGGACAGGTGGCTGTTACTGGAATGCATCAATGGATCTGTGCAGATAATCATGCTACAGGTTCTGGTTCGTCATCTGAGTTTGCTGATGGGTGGCAATCTCAGTTTTCTGCTGGAATTAGGACAATTGTTGTTGTAGCTATAGTCCCATTTGGAGTTGTTCAGCTTGGCTCTTTAAAGAATGTGATTGAAGATATGAGGATCATAACTCATATCAGAAATATTTGTTTGGCTACTCAAGATTACTCAGTAGGCCATATTCCTAGTCAAATACGAAGTAGTGTGAAGAATTCATCTCTGCCTGATGCATCATCAATGGGAAAATTGTCTTCAGAAATGGTACCCGCTTGCTTAACTCATACAGAGAAACCCGCAAAGGGTGAAAAAATGGATATTTTGATGCCCTTTCCACGTTCTGGGAAGAACTTTTCACCTTCTGCTGTTTATCAGAAAATGGCTGTTGATATGGCCAAGCATAATGGGTCTGAATTTTGCAGCGAGGAAAGTTCAGTTTTGCTTCAGTCAGTATTAAATATGATGAATGTGGAGCATCAGGAGTTTGTAGAGTTGAGTCCTCTAAATGAGAGGAAGTGTAGAGGGGAAAGTAACAGCTACGAAGATGTAAGGATGGAATCAGAAAAAAATTCCATGTCATTGGTGCATAATTCAGTTATGGATGATAATAGCTTCAATGATTTAATATGTCCATCAGAAAAAGTTGTAGCAGATTTTGCCTGCTTCCCTTCAGACTATCTTGATCTTGTCTGTGAAAGTGACAAGTTACATTATTTAAATATAAACCAAAAAGAGGCATTTACTTTTCCCAGAGCTTCAGATGCAAGCTCCCAAAAAGATACAGAAACTTCAGAGTTTCAGGCTGAGCCTTGTTATAAGAATACCTCTTATGCATTGTTGAATTTTCCTGCTGGCTGTGAGCTACATGAAGCCCTTGGACCAGCTTTTCTGAAAAGGAGTAGAAATTTTGATTGGGAGGCACAAGTAAATCAAGATGTTAAAACTATGGAGAGGCCAGATGAAGTTAGCTGTAGCCAGCTGACTTGTGAATCTCATCCAGAGCATCTTTTGGAAGCAATAGTGGCCAATGTTAGTCATAGTAATAATGATGTTAAGAGTGAGCTATCATTTTCTACTTCAGTGCAGTCTGCAATGGTATCTGATGGAAATCCTGTAGCTTCTGCTCACACTATGCACGCTATTAATTCAGAAGGTTATTCAGTAGATCAGTCTTCTCTTGTCAGAGAGGACATATACCAATCCTTGACTTCATCAGGGATTTGCGGTGTGATGTCCCCCAAAGGTTTTTCAACGTGTCCTAGTTCATGTAGTGAACAGTTTGAAAGGTCTTCTGAACCAGGTAAGAACAAGAAGAGGGCTAGGCCTGGGGAAAGTAGTAGGCCTAGGCCAAGGGACAGACAACTGATCCAAGATCGTATTAAGGAGTTGAGAGAATTGGTGCCAAATGGAGGAAAGTGCAGTATTGACTCACTACTGGAGCGCACAATAAAGCACATGCTCTTTCTACAGAGTGTAACTAAGCATGCTGACAAGCTAAATAAATTTGCTGATTCAAAGACAAAGTTACATCACACGGAAACAGATGTTCTTGGATCCTCTAGCTATGAACAGGGTTCGAGTTGGGCAATGGAGGTAGGTGGCCATTTGAAAGTTCATTCAATATTAGTGGAGAATCTTAGCAAGAATGGGCAGATGCTTGTTGAGATGCTGTGTGAAGAGTGCAGCCATTTTCTGGAGATAGCAGAAGCCATAAGAAGCTTGGGGCTGACAATTTTGAAAGGTGCAACAGAAGCTCATGATGAGAAGACATGGATATGTTTTGTGGTTGAGGGCCAAAACAACAGAAATGTACACAGATTGGATATATTGTGGCCGCTTGTTCAAATACTGCAATCCAAGGGTACAGTATATTCACAATAA 2472 0.4159 MIEVDCQMKKLGQLSLCVCESFKSKVRSLGLGVLEFVLVVSNGYGSSAIANSWTAIKTASRIAEEAGWKRILQGKLGQGDYRELEGMHQALRSLCFNTDWNYAIFWKLKHRARMILTWEDAYYDNPDYYDSLENKCNQKTLEQIRGGHFSHDPLGLAVAKMSYHVYSLGEGIVGQVAVTGMHQWICADNHATGSGSSSEFADGWQSQFSAGIRTIVVVAIVPFGVVQLGSLKNVIEDMRIITHIRNICLATQDYSVGHIPSQIRSSVKNSSLPDASSMGKLSSEMVPACLTHTEKPAKGEKMDILMPFPRSGKNFSPSAVYQKMAVDMAKHNGSEFCSEESSVLLQSVLNMMNVEHQEFVELSPLNERKCRGESNSYEDVRMESEKNSMSLVHNSVMDDNSFNDLICPSEKVVADFACFPSDYLDLVCESDKLHYLNINQKEAFTFPRASDASSQKDTETSEFQAEPCYKNTSYALLNFPAGCELHEALGPAFLKRSRNFDWEAQVNQDVKTMERPDEVSCSQLTCESHPEHLLEAIVANVSHSNNDVKSELSFSTSVQSAMVSDGNPVASAHTMHAINSEGYSVDQSSLVREDIYQSLTSSGICGVMSPKGFSTCPSSCSEQFERSSEPGKNKKRARPGESSRPRPRDRQLIQDRIKELRELVPNGGKCSIDSLLERTIKHMLFLQSVTKHADKLNKFADSKTKLHHTETDVLGSSSYEQGSSWAMEVGGHLKVHSILVENLSKNGQMLVEMLCEECSHFLEIAEAIRSLGLTILKGATEAHDEKTWICFVVEGQNNRNVHRLDILWPLVQILQSKGTVYSQ 823
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi11g0727 823 MobiDBLite consensus disorder prediction 627 651 - -
Glsi11g0727 823 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 637 686 IPR011598 GO:0046983
Glsi11g0727 823 MobiDBLite consensus disorder prediction 618 651 - -
Glsi11g0727 823 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 650 692 IPR036638 GO:0046983
Glsi11g0727 823 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 87 246 IPR025610 -
Glsi11g0727 823 PANTHER TRANSCRIPTION FACTOR BHLH155-LIKE ISOFORM X1-RELATED 87 819 IPR043561 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi11g0727 Glsi-ChrGlsi11 4594323 4601665 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi11g0727 88 818 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G31280 41.948 1.36e-165 496
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi02g3064 02 79252698 79256741 Glsi11g0727 11 4594323 4601665 CCT
Glsi11g0727 11 4594323 4601665 Glsi11g0727 11 4594323 4601665 ECH