Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi11g0722 ATGGCTTCTCCGACTGGAAATGGCACTGGCTCTCCCTGCGGGGCATGCAAGTTCCTGAGACGAAAGTGCGCAGCTGATTGCGTCTTTGCGCCTTATTTCTGCTCCGACCAAGGTCCTGCTAGATTTGCAGCCATCCATAAGGTGTTTGGTGCTAGCAATGTCGCCAAATTGCTCTTGCACATACCCGCTCATGATCGTTGTGAGGCAGTCCTCACTATTGCTTATGAAGCCCAGGCTCGGATTAGAGACCCTGTTTATGGCTGTGTCTCCCACATTTTTGCCTTACAACAACAGGTGGCATGCTTGCAGGCACAACTGATGCAAGTGAAGGCTCAACTGGCGCAGAGTCTAATGGATTCCAGGAACTTTGAAAACCAGTGGCCAGGGAACTTTGGTGGACAAGCGATGAATACATATTGTCCAGCCAACATGAACCCTATATCTCCTCAGAGCTCGCTTGAGTCAATTGACCACAGTATCAATGATGGAATTAGCATGCAAGATATTCAAAGCGGAGAGGATTTCTCATTCCAACCTTGTTCTAAGAAAGGGCCTTTTAACAATGACCTGGGTGAGCTGCAAGAACTTGCACTCAGGATGATGAGGAATTAG 612 0.4837 MASPTGNGTGSPCGACKFLRRKCAADCVFAPYFCSDQGPARFAAIHKVFGASNVAKLLLHIPAHDRCEAVLTIAYEAQARIRDPVYGCVSHIFALQQQVACLQAQLMQVKAQLAQSLMDSRNFENQWPGNFGGQAMNTYCPANMNPISPQSSLESIDHSINDGISMQDIQSGEDFSFQPCSKKGPFNNDLGELQELALRMMRN 203
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi11g0722 203 Coils Coil 92 112 - -
Glsi11g0722 203 Pfam Lateral organ boundaries (LOB) domain 12 110 IPR004883 -
Glsi11g0722 203 ProSiteProfiles LOB domain profile. 11 113 IPR004883 -
Glsi11g0722 203 PANTHER LOB DOMAIN CONTAINING PROTEIN 8 136 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi11g0722 Glsi-ChrGlsi11 4559837 4560878 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi11g0722 5 203 AS2 family AT2G42430 52.459 5.20e-72 217
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Glsi11g0722 LOB 1.1e-36 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi02g3074 02 79330909 79339897 Glsi11g0722 11 4559837 4560878 CCT