Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi11g0718 ATGCCTATGGGCTTACTTTGTCTGTTGCTTAAACCTTCTCCACATCCTCTTTTCTATAATACCTCTCTCTCAATCTCTATTCCTCGTATTCCCATGGAATTTAGCTACCCAGAAGACTCCAAGAGCTCCGGCGAATCCGAGCGAAATGATTATACAGGAACTGGCAGATCCTATGAGTGTGTCTTTTGCAAGAGAGGCTTCAGTACAGCACAAGCTTTGGGAGGACACATGAATATACACAGGAAAGATAGAGCCAAGACCAAACCCAGTTTTCCTCCTTCAACTTCAATCAAGGTTGCGGATCTCGGTTTCTATTCTCCAATTCCTACACGTCCTGAGGTATATAATAATTACCCTCAAATTTATTTTCCTACTCCCGCATATGGTACAATCAGATCTTCGCACCTACAGTATCGAGATCGGGACCTGTTTGGAGAAGATTGGAGGAGGGGTTTGAGTTTGTATACTAATCCTTTCTGTGTACTTGAAAATAAAGAGAAGGTACAAGACAAGAGAGAAGAGGATGGGCTGGATTTGGAACTTCGACTGGGTTATCCAGTATAG 564 0.4291 MPMGLLCLLLKPSPHPLFYNTSLSISIPRIPMEFSYPEDSKSSGESERNDYTGTGRSYECVFCKRGFSTAQALGGHMNIHRKDRAKTKPSFPPSTSIKVADLGFYSPIPTRPEVYNNYPQIYFPTPAYGTIRSSHLQYRDRDLFGEDWRRGLSLYTNPFCVLENKEKVQDKREEDGLDLELRLGYPV 187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi11g0718 187 ProSitePatterns Zinc finger C2H2 type domain signature. 60 80 IPR013087 -
Glsi11g0718 187 Gene3D Classic Zinc Finger 39 99 - -
Glsi11g0718 187 Pfam C2H2-type zinc finger 58 82 - -
Glsi11g0718 187 SUPERFAMILY beta-beta-alpha zinc fingers 56 85 IPR036236 -
Glsi11g0718 187 PANTHER OS07G0101800 PROTEIN 39 186 - -
Glsi11g0718 187 ProSiteProfiles Zinc finger C2H2 type domain profile. 58 85 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi11g0718 Glsi-ChrGlsi11 4543609 4544172 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi11g0718 49 187 C2H2 Transcription Factor Family AT3G09290 36.054 3.00e-15 68.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Glsi11g0718 zf-C2H2_6 9.1e-06 CL0361