Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi11g0717 ATGGTCAGGCACGTCTACTCCTTCCGTCACAATGCACTACATACAAATTTTGTAGATACACAGTTCATTCAGGATCCTGTAGATCAGTCAGGTTTAGCTAGCAAGAGTCAATCTATAGTGAACATCTTGTTAGTGTTTCACCTTGTAGACATCCTGGCTGAGCTCATTCGTATTTCTTGCTATCAAATGGCAGACAGGACATTTTGCCCAGTGTTGCATATTGCCCTTGGGATCATGAGGTGTAAATTTTGCCAAGCCTTGGTAAAAAAGTTCGGACTGAACAAGTCCAAAAGCTCCATGGAAGGAAACTATCTGAGCAGAGACAAGCATAAAGAGGAAAGCTTCAGCTTTGAGGAGCATACATGGGGAACTTCATGGCCTGCGAGAAATTACTCCTGCAGCTTTTGCAAGAGAGAGTTCAGGTCTGCTCAAGCTTTAGGTGGTCATATGAACGTTCACAGGAGAGATAGGGCAAGATTGAGATCAGGCGTACCCTTATGGGTTTCTGAGTGTCCTAAACCTAACCCTAACCCTAACCCTAACCCTAACCCTACCACTACCACTACCACTACCGCTAAGCCTAACCCAACTCTTCTTTCACCCTCCTCAATATTGTCTCCTTTATCTTCTGAGTTTTTGAATTACACACATCGCTCTCCACTTTATAGCCCTTCTCTGACTTTGTCTTCTTCACCCTCCTTAGCTTCCACCAGTGAAGATAAGAAACCGACGCTCACATCTTCCCAGCTTTTGAGTCCTCAAAGCGGTGAAATTAAGATGAATTATAGAAACACGAGAAGTGCTTTTGGATCAATCGGGGAATTAAAGGGTTGTTCAAAGGAGGAAGAGCATAAGATTTCCGAGAATAATAGCGAGGATAACATAACGTTGGAGTTGGGAATAGGGTTGCTTCAACACCCAAAGGAGAAGTTAGATTTGGAGCTTCGACTCGGCCATTGCTAA 963 0.4382 MVRHVYSFRHNALHTNFVDTQFIQDPVDQSGLASKSQSIVNILLVFHLVDILAELIRISCYQMADRTFCPVLHIALGIMRCKFCQALVKKFGLNKSKSSMEGNYLSRDKHKEESFSFEEHTWGTSWPARNYSCSFCKREFRSAQALGGHMNVHRRDRARLRSGVPLWVSECPKPNPNPNPNPNPTTTTTTTAKPNPTLLSPSSILSPLSSEFLNYTHRSPLYSPSLTLSSSPSLASTSEDKKPTLTSSQLLSPQSGEIKMNYRNTRSAFGSIGELKGCSKEEEHKISENNSEDNITLELGIGLLQHPKEKLDLELRLGHC 320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi11g0717 320 ProSitePatterns Zinc finger C2H2 type domain signature. 133 153 IPR013087 -
Glsi11g0717 320 PANTHER OS07G0101800 PROTEIN 108 319 - -
Glsi11g0717 320 Pfam C2H2-type zinc finger 131 155 - -
Glsi11g0717 320 MobiDBLite consensus disorder prediction 224 249 - -
Glsi11g0717 320 MobiDBLite consensus disorder prediction 167 201 - -
Glsi11g0717 320 ProSiteProfiles Zinc finger C2H2 type domain profile. 131 158 IPR013087 -
Glsi11g0717 320 MobiDBLite consensus disorder prediction 184 201 - -
Glsi11g0717 320 Gene3D Classic Zinc Finger 106 163 - -
Glsi11g0717 320 SMART c2h2final6 131 153 IPR013087 -
Glsi11g0717 320 SUPERFAMILY beta-beta-alpha zinc fingers 128 157 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi11g0717 Glsi-ChrGlsi11 4534645 4538300 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi11g0717 119 318 C2H2 Transcription Factor Family AT3G23130 39.500 1.25e-24 97.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Glsi11g0717 zf-C2H2_6 2.1e-06 CL0361