Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi11g0716 ATGTTACAACACACATATCTAAATGGGAGTCTTGTTTTGCAGAAACCGGGTGGAATCATTGCTCTGCTTGATGAAGCTTGTATGTTTCCGAAGTCAACCCATGAAACATTTTCGCAAAAGCTTTATCAGACATTCAAAGATAACAAACGCTTCATCAAGCCAAAATTGGCTCGCTCGGATTTTACTATTGTTCATTATGCAGGGGAGGTTCAGTATCAGTCTGAACAGTTTATAGACAAAAACAAAGACTATGTTGTTCCTGAACATCAAGACATGCTGAGTGCTTCAAAATGTTCTTTTGTAGCAGGCCTTTTCCCTCCACTTTCTGAGGAGACAGCCAAATCGGCTAAGTTTGCTTCTATTGGTTCGCGATTCAAGCTACAATTACAACAATTGATGGATACACTGAAATCCACCGACCCCCACTATATTAGATGTGTGAAGCCAAATAATGTATTGAAACCTGCCATATTTGATAATAAGAACGTCATCCAACAACTACGCTCTGGTGGTGTTCTTGAAGCAGTAAGAATTAAATGTGCTGGATTCCCGACTCACAGGACCTTTAGTGAATTTTTAGCTCGATTAGCAATTCTTGCTCCGGAGGTTGTCCAAGGGAACCTTGATGAAATGGATTCATGTAAAAAGATTTTGCAGAAGATTGGCCTTACAGGTTATCAGATTGGGGAATCCAAGATATTCTTGAGAGCTGGTCAGATGGCTGAGTTAGATGCTCAAAGAACACAACTGCTTAGCAACTCCGCCACAGTCATCCAGAAGCGGTGCAAAACTCATATTGCTCAGAAAAAGTATGTGAAGTTGCGAAAGTCTTCTGTCTATGTGCAATCCTTTTGTAGAGGAGAACTGGCTCGGAGATCATATTATGACATGAAGAGGAGGGCAGCTGCTATCAGAATTCAAGGGAATATGCGTGGAAAACTAGCCAGAAAAAAATACAAGAAGATATATATTTCTGCCATTGTATTGCAGACAGGTATCCGTGTGATGGCAGCTCGTGATAAATTGAGATCTAGAAAGCAAACTAGTGCATCAATTAAAATTCAGGCTGTGGAAAATAAAAGCCTTTCCAAGGAAGAATCCTTGAATCCTTTGCAAGATGCTGAAAGCATTGTAGCTACCAGGGAATCCATAAATCCTTCGCAAGATGCTAAAAGCATTGAAGCTACCAGGGAATCCATAAATCCTTTGGATGATGTTGAAAGCTTTGAAGCTATCAGGGAATCCTCAAGTCCTTTCCAAGACACTAAAAAGATTGAGGCTCTCACTGCAGAAGTAAAAAGTTTAAAGGTCATGTTGCACACTGAAAAACAAAGAGCTGATGCATGTGAAAAGAAATATGTAGAGGCCCAAGAATCTAGAGAAGAGTTACGGAAAAAGTTAGCAGAAACAGAAAAAAGAGTATATCAGCTTCAGGACTCCTTGAACAGGATGATATCTTCCATGTCAAGCCAAGTTGCAGAGCTGAAAATGATTTTGAGTACATCATCAAGATTGAGTTCAACTTTTCGGCCTATTGCTAGAGTTGATATTGCTTCCAGTAATTCTGATACTTCTTCCACGGACTCTGACTTCACATTTCCAGCTCCTACTTCAAATCCCGCAACTTTATCTGATTCCAAGCCTAGTTCTTTTCAACTAGTAGTTCAGGATGTCTCTGCAGCAGATGGATCAGGATCTGAAAGTGAAAAGGAGGGTTCATTTGATGATTTCTTCTAG 1737 0.4013 MLQHTYLNGSLVLQKPGGIIALLDEACMFPKSTHETFSQKLYQTFKDNKRFIKPKLARSDFTIVHYAGEVQYQSEQFIDKNKDYVVPEHQDMLSASKCSFVAGLFPPLSEETAKSAKFASIGSRFKLQLQQLMDTLKSTDPHYIRCVKPNNVLKPAIFDNKNVIQQLRSGGVLEAVRIKCAGFPTHRTFSEFLARLAILAPEVVQGNLDEMDSCKKILQKIGLTGYQIGESKIFLRAGQMAELDAQRTQLLSNSATVIQKRCKTHIAQKKYVKLRKSSVYVQSFCRGELARRSYYDMKRRAAAIRIQGNMRGKLARKKYKKIYISAIVLQTGIRVMAARDKLRSRKQTSASIKIQAVENKSLSKEESLNPLQDAESIVATRESINPSQDAKSIEATRESINPLDDVESFEAIRESSSPFQDTKKIEALTAEVKSLKVMLHTEKQRADACEKKYVEAQESREELRKKLAETEKRVYQLQDSLNRMISSMSSQVAELKMILSTSSRLSSTFRPIARVDIASSNSDTSSTDSDFTFPAPTSNPATLSDSKPSSFQLVVQDVSAADGSGSESEKEGSFDDFF 578
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi11g0716 578 ProSiteProfiles IQ motif profile. 274 303 IPR000048 GO:0005515
Glsi11g0716 578 ProSiteProfiles IQ motif profile. 299 323 IPR000048 GO:0005515
Glsi11g0716 578 Gene3D Kinesin motor domain 140 178 IPR036961 -
Glsi11g0716 578 FunFam unconventional myosin-Va 253 301 - -
Glsi11g0716 578 Gene3D Myosin VI head, motor domain, U50 subdomain 84 117 - -
Glsi11g0716 578 Gene3D - 13 139 - -
Glsi11g0716 578 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 11 300 IPR027417 -
Glsi11g0716 578 MobiDBLite consensus disorder prediction 519 578 - -
Glsi11g0716 578 ProSiteProfiles Myosin motor domain profile. 1 248 IPR001609 GO:0003774|GO:0005524|GO:0016459
Glsi11g0716 578 MobiDBLite consensus disorder prediction 519 563 - -
Glsi11g0716 578 Gene3D - 182 249 - -
Glsi11g0716 578 SMART iq_5 250 272 IPR000048 GO:0005515
Glsi11g0716 578 SMART iq_5 298 320 IPR000048 GO:0005515
Glsi11g0716 578 SMART iq_5 273 295 IPR000048 GO:0005515
Glsi11g0716 578 Pfam IQ calmodulin-binding motif 253 271 IPR000048 GO:0005515
Glsi11g0716 578 Pfam IQ calmodulin-binding motif 275 294 IPR000048 GO:0005515
Glsi11g0716 578 Pfam IQ calmodulin-binding motif 300 320 IPR000048 GO:0005515
Glsi11g0716 578 Pfam Myosin head (motor domain) 11 236 IPR001609 GO:0003774|GO:0005524|GO:0016459
Glsi11g0716 578 ProSiteProfiles IQ motif profile. 251 278 IPR000048 GO:0005515
Glsi11g0716 578 PANTHER MYOSIN 11 506 - -
Glsi11g0716 578 SMART MYSc_2a 1 249 IPR001609 GO:0003774|GO:0005524|GO:0016459
Glsi11g0716 578 Coils Coil 425 480 - -
Glsi11g0716 578 Gene3D - 250 299 - -
Glsi11g0716 578 Gene3D - 300 353 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi11g0716 Glsi-ChrGlsi11 4521091 4534561 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi11g0716 252 498 Myosins gene family AT1G08730 29.435 7.56e-09 57.0