Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi11g0701 ATGGCGTCGGAAGAGCCTACTGTAGCCGTGGAACCCGCACCAGAACCAGCTGATGTTCAGCCAACAGAGGAGAAAGAGGCCCCCAAGGCGGGTGGCAAGGCGAAGAAAGTTAAAGAGCTAAAACCAAAAAAAGCTGCTGCTCCCAAATCTCGGAGCCCTCCCTCGCATCCTCCTTATGAAGAGATGATCAAGGATGCGATTATTACGCTGAAGGAGAAGACTGGTTCGAGCCAGTACGCGATTGCGAAGTTCATGGAAGAGAAACACAAGCAGCTCCCCTCCCACTTCAGGAAGCTTGTGTTGTCTCAATCGAAGAAGCTCGTGGCTTCTGGAAAGCTTGTCAAAGTCAAGGGCTCCTTCAAGCTTCCTTCCGCTAAGTCATCGGTACCAAAGCCATCTAAGGATATTGCTCCGGTTAAGAAGAAGCCTGCGGTAACTAAACCGAAGCCTAAGCCAGCTTCCAAGCCTAAGGAGACGAAGACAACGAGGGCGACAGCTAAGGCGCCTGCTAAGCTGAAAGCAGTTTCCAAGGGAAAGCCTAAAGCGGCTGCCAAGCCAAAGGCTACTCCGAAGCCCAAAGTTGCTCCGACGAAGGCCAAGTCTGCTGCCTCGAAGCCCAAAGCTGCTGCTAAGCCGAAGCCAGCTGCAAGGCCAAAACCTAAGGAGAGACCGGCTAAGGCTTCAAGGACATCGACCAGGACATCTCCTGGGAAGAAAGCCCCTGCTCCTAAACCGACACTAAAGAAGGCTGCTGCTCCCAAGAAGGCACCTGCTAAAAGCGTTAAGCCCAAGAGTGTAAAGTCTCCGGTAAAGAAGGCTTCAACAAGGAGTGGAAGGAAGTGA 843 0.5255 MASEEPTVAVEPAPEPADVQPTEEKEAPKAGGKAKKVKELKPKKAAAPKSRSPPSHPPYEEMIKDAIITLKEKTGSSQYAIAKFMEEKHKQLPSHFRKLVLSQSKKLVASGKLVKVKGSFKLPSAKSSVPKPSKDIAPVKKKPAVTKPKPKPASKPKETKTTRATAKAPAKLKAVSKGKPKAAAKPKATPKPKVAPTKAKSAASKPKAAAKPKPAARPKPKERPAKASRTSTRTSPGKKAPAPKPTLKKAAAPKKAPAKSVKPKSVKSPVKKASTRSGRK 280
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi11g0701 280 MobiDBLite consensus disorder prediction 18 46 - -
Glsi11g0701 280 FunFam Histone H1 50 135 - -
Glsi11g0701 280 MobiDBLite consensus disorder prediction 119 280 - -
Glsi11g0701 280 MobiDBLite consensus disorder prediction 1 63 - -
Glsi11g0701 280 SMART h15plus2 53 119 IPR005818 GO:0000786|GO:0003677|GO:0006334
Glsi11g0701 280 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 55 124 IPR005818 GO:0000786|GO:0003677|GO:0006334
Glsi11g0701 280 SUPERFAMILY "Winged helix" DNA-binding domain 52 131 IPR036390 -
Glsi11g0701 280 Gene3D - 50 135 IPR036388 -
Glsi11g0701 280 Pfam linker histone H1 and H5 family 56 122 IPR005818 GO:0000786|GO:0003677|GO:0006334
Glsi11g0701 280 CDD H15 53 134 IPR005818 GO:0000786|GO:0003677|GO:0006334
Glsi11g0701 280 PRINTS Histone H5 signature 145 159 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Glsi11g0701 280 PRINTS Histone H5 signature 181 198 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Glsi11g0701 280 PRINTS Histone H5 signature 42 63 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Glsi11g0701 280 PRINTS Histone H5 signature 69 86 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Glsi11g0701 280 PANTHER HISTONE H1 28 254 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi11g0701 Glsi-ChrGlsi11 4407153 4408090 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi11g0701 57 132 Single Myb Histone (SMH) Gene Family AT1G72740 32.911 6.63e-07 47.8