Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi11g0700 ATGGACCGAAGCCCTAATACCCAATTGGTTGCCAGTGCCGTGGCCAGAGGCTCCCGGGTTAATACAAAACCACACCCAACCCGTTATAAGCGCTCGCCGTTATTATGCTCCAAAAACCCTAGTCATCCGTCACAAACGACCACTCGTATCCAGCCTTCGATTCTCAGTCGCAGCCATGGTGAAGGCCTCATCCCTATCAAGAAACCGCTTGCTTCCAGGGAAAGTGAAGGAAACATCGAAATGGCGGATGTTGACGCAGATGTCGCACCAGGGCTGCCGAAGAAGAGGACGTTCAAGAAGTTCAGTTTCAGAGGAGTTGATCTGGATGCGCTCTTGGACATGTCTACTGACGAGCTTGTCAAGCTCTTCCATGCACGGGCTCGCAGAAGGTTTCAACGCGGTTTGAAGCGAAAGCCTATGGCACTGATCAAGAAGCTGCGTAAGGCGAAACGGGAGGCCCCGCCCGGTGAAAAGCCAGAACCAGTAAGAACTCACCTGCGGAACATGATCATTGTACCTGAGATGATTGGTAGCATCATTGGTGTTTACAATGGGAAGACCTTCAATCAAGTTGAAATCAAACCAGAAATGATCGGTCACTATCTAGCTGAATTCTCAATCTCTTACAAGCCAGTTAAGCATGGAAGGCCCGGTATAGGTGCTACTCACTCCTCGAGGTTCATTCCTCTCAAGTGA 696 0.5014 MDRSPNTQLVASAVARGSRVNTKPHPTRYKRSPLLCSKNPSHPSQTTTRIQPSILSRSHGEGLIPIKKPLASRESEGNIEMADVDADVAPGLPKKRTFKKFSFRGVDLDALLDMSTDELVKLFHARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi11g0700 231 MobiDBLite consensus disorder prediction 1 15 - -
Glsi11g0700 231 PRINTS Ribosomal protein S19 family signature 196 211 IPR002222 GO:0003735|GO:0005840|GO:0006412
Glsi11g0700 231 PRINTS Ribosomal protein S19 family signature 184 196 IPR002222 GO:0003735|GO:0005840|GO:0006412
Glsi11g0700 231 PRINTS Ribosomal protein S19 family signature 164 183 IPR002222 GO:0003735|GO:0005840|GO:0006412
Glsi11g0700 231 PANTHER RIBOSOMAL PROTEIN S19P FAMILY MEMBER 92 231 IPR002222 GO:0003735|GO:0005840|GO:0006412
Glsi11g0700 231 MobiDBLite consensus disorder prediction 1 49 - -
Glsi11g0700 231 FunFam 40S ribosomal protein S15 88 231 - -
Glsi11g0700 231 NCBIfam 30S ribosomal protein S19 98 231 IPR005713 GO:0003735|GO:0006412|GO:0015935
Glsi11g0700 231 Gene3D 30s Ribosomal Protein S19; Chain A 90 231 IPR023575 GO:0003735|GO:0005840|GO:0006412
Glsi11g0700 231 Hamap 30S ribosomal protein S19 [rpsS]. 127 220 IPR002222 GO:0003735|GO:0005840|GO:0006412
Glsi11g0700 231 Pfam Ribosomal protein S19 129 214 IPR002222 GO:0003735|GO:0005840|GO:0006412
Glsi11g0700 231 ProSitePatterns Ribosomal protein S19 signature. 184 208 IPR020934 GO:0003723
Glsi11g0700 231 SUPERFAMILY Ribosomal protein S19 135 215 IPR023575 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi11g0700 Glsi-ChrGlsi11 4393700 4396234 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi11g0700 81 231 Cytoplasmic Ribosomal Protein Gene Family AT5G09500 86.093 4.00e-90 260
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi11g0700 11 4393700 4396234 Glsi11g0700 11 4393700 4396234 ECH