LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Glsi11g0698	ATGCAATGGCGCTGCCCCAAACTGTCATCTCCTACTTCTCAAAACAAAGGTGGCTTGGAGTTCGGGAACATACGGTTTGTCCATTTTTTTGGTCCTTTATCTAATAAACGGCTCCCATCAACCATGATGGACAAAATCCCGGATCCTGGTCCCCAAGGGCAATCTAGCAGTAGCTGGAATACAATATACTTAAAAGTTGCAAGCTTTGTATTCTTATGGTTGTGTGAATTCTCAAAGCAAAGCGAAGTCCTCTCTCTCACACCTTTCAATCTCAAAATGATGGAAGAGGAATCTAGGGTTTTATGGTCCCAATTAGAAACTAATATGCAGGAGGTTGAAGAAGCTAATAGAGCAGCTGTTGAAAGCTGTCAGAGAGTTCTAAGTTTGTTGACTCAGCCCCAGGATCAGGTTCCCAATGGGAATTTAATGGTGGAAACTCGGGAGGCTGTGGCAAGATTCAAAAAAGTTGTTTCCCTGCTCAGTAATGGTTGGGATCATGCTAGAGTCAGAAAGCCCAAAAAATCTCAACTCCCTTTTTCCCAAAATGTCCTCTTAGACAATCCCAATTGTAAAACAAACCATCATCCAAAAGATCTGCAGTTTCTGCAAACTAGCTTTTCCGACAATTCAATTCAGGAATCGGGCTCAAACGTCAGAAATTCACTGTGTCTGGGAAACCCATCTTTGGAATTGAGCTCAAATGGGAAAAATCTCCTTCACCTTACCCAACAAGCGTCATCACCGCACTATCACATCCTTCAGCAGCAGCAACAGCAACAGCAACAAAGAATATTGCTTCAACAGCAACAAGTGAAACACCAAGCAGAAATGATATTTCGAAGGAATAATAGTGGAATAAGTCTGAACTTTGATAGCTCTAGCTGTACACCGACAATGTCATCTACTAGGTCTTTCATTTCTTCATTGAGCCTAGATGGAAGTGTAGCTAACTTGGACGGAAGTGCCTTCCATATAATAGGAGCTCCACACTCTTCGGATCAAAATTCACAACAACACAAGAGAAAATGTTCTGGCAGAGGAGACGAGGGGAGTGTGAAATGTGGGAGCAGCAGCGCTAGATGCCATTGCTCTAAGAAGAGAAAGCATAGAGTGAAGAGGTCAATCAAGGTGCCTGCTATCAGCAACAAGCTTGCAGACATCCCCCCCGATGAATATTCATGGAGAAAATATGGGCAGAAGCCAATCAAAGGCTCTCCTCATCCTAGAGGATACTATAAGTGCAGCAGCATGAGAGGCTGCCCTGCTAGGAAGCATGTTGAGAGGTGCTTTGAAGACCCTTCCATGCTAATTGTTACGTATGAAGGCGAGCATAACCACCCTAGAATACTAACACAATCTGCAAATGCATGA	1371	0.4347	MQWRCPKLSSPTSQNKGGLEFGNIRFVHFFGPLSNKRLPSTMMDKIPDPGPQGQSSSSWNTIYLKVASFVFLWLCEFSKQSEVLSLTPFNLKMMEEESRVLWSQLETNMQEVEEANRAAVESCQRVLSLLTQPQDQVPNGNLMVETREAVARFKKVVSLLSNGWDHARVRKPKKSQLPFSQNVLLDNPNCKTNHHPKDLQFLQTSFSDNSIQESGSNVRNSLCLGNPSLELSSNGKNLLHLTQQASSPHYHILQQQQQQQQQRILLQQQQVKHQAEMIFRRNNSGISLNFDSSSCTPTMSSTRSFISSLSLDGSVANLDGSAFHIIGAPHSSDQNSQQHKRKCSGRGDEGSVKCGSSSARCHCSKKRKHRVKRSIKVPAISNKLADIPPDEYSWRKYGQKPIKGSPHPRGYYKCSSMRGCPARKHVERCFEDPSMLIVTYEGEHNHPRILTQSANA	456

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Glsi11g0698	456	ProSiteProfiles	WRKY domain profile.	383	449	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Glsi11g0698	456	MobiDBLite	consensus disorder prediction	328	351	-	-
	Glsi11g0698	456	Pfam	WRKY DNA -binding domain	390	447	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Glsi11g0698	456	PANTHER	WRKY TRANSCRIPTION FACTOR 21-RELATED	110	450	IPR044810	GO:0003700
	Glsi11g0698	456	SMART	WRKY_cls	388	448	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Glsi11g0698	456	FunFam	WRKY transcription factor 65	372	449	-	-
	Glsi11g0698	456	Gene3D	WRKY domain	372	448	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Glsi11g0698	456	SUPERFAMILY	WRKY DNA-binding domain	386	447	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Glsi11g0698	456	Pfam	Plant zinc cluster domain	340	386	IPR018872	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Glsi11g0698	Glsi-ChrGlsi11	4384003	4389579	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Glsi11g0698	109	453	WRKY Transcription Factor Family	AT2G30590	56.397	9.40e-123	360

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	WRKY	Glsi11g0698		WRKY	2.4e-26	CL0274