Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi11g0694 ATGGGAAGGCACCGGGTGCTTGAAACTCCTGGTTCATGCTCTCTTGGACGAAGACGCCCTCGATTCAGATCATCTAAAACTCTCCCTCTCTCCAAATCCACTAAAACCTACGTCAAATCTTCACTAATCACGCCCGCCTATATCATCAGCGCGCCCCAAAATTCTCGAGCAGCTGTTTTTAACCATCTTCGTCGATATCGATCGCTAGGTCCGCTTCTTCATTCTACGCACGCGTCTTATGCATTTTATTCAATGTTTTCTTGTTCCCTTTCCCATATTGTCTATGTGGTTTTCCGTGTTTTTCAGGTTAATGCCGGTGATTATAACGATGTGGACGTAAATTTTGGTTATGTACGCGTACTGATAGCATGCACCGGGTGGATACGTGGGGGAGAGAGAAAGAGGTGGGTTGAGAGCGACGCTCGGCGGCGGTATTTGACGATGGCCAATCAGTTAGTCAAAGTGAAGAGTGGGGCGATTGCGGCATGCATGACCTGCCCACTCTGCAATAAGTTGTTCAGGGAGGCCACCACTATATCTGAATGTCTTCATACGTTTTGCAGGAAGTGCATCTATGATAAAATTACAGATGAGGAATTAGAATGCTGTCCAATATGCAATATTGATTTGGGATGTGCTCCACTCGAGAAATTGAGGCCAGACCACAGTTTGCAAGATGTAAGGGCTAAAATTTTCCCTTTGAAAAGAAGAAAGGCGAAAGCACCTGAGGTTGTTCCCTCAGTAATATTACCAGCTAGAAGAAAGGAAAGATCAATTTCATCTTTGGTTGTCAGCACTCCCAGAGTACTGACACAGGCAACCATGACAGGGAGGAGAACAAAACCTACAAGAAAGGCTAGTGGTCTGCGAGCCTCTAGTTTTTCCATTGAAAAACCCATTAAAAAAGAAGAAGATTTATTGGAAGATCATCTGGAGAGTTCAAGCTCACCCGACACTTCGAACAAGTTTACTCAGAATACTGGACAGAGTTTGTCCCCTCTGGAGGCCAACACATCCTTACCCCATAAAGAAACAGAGAATGGTGCTGAACCATGGGAAGCAAAATTGGATCTTTGGAAACCTTTGAATTGTTTGGTAGAAGTTGCAAGTAGAAGTAAATCTTTCAAGTCTAATGTGCAAGGATGTGATGCTAAACTAGAATTGGTGCAGGGAAATGAGAGTGGCTCTCAAGTGCAAAAATCCAAAAATAAGGAATATAAACGCAAGGAAAAAGTTGAGAATGAGAAAACTGACACTTCTCCTGTCTCTTTAGATACAGCAAAGCCCAATAAAATGCGCAGAGTTCGCCGGAAAAAGGAACCTCTTTTTGAAGAATCTGGCATATCACCCCAAGTTGTGCTGGATGCTACCAGCGCCAAACTCAAAAAGAGAACTGGTCCAATTTGGTTCTCCTTAGTAGCTTCTGAAGACCAGGAAGGAGATGCACCATTGCCCCAAATTCCTGCATGTTATGTAAGAATAAAGGATGGAAGTGTACCTGTCTCATTTATACAAAAATACCTAATGAAGAAACTAGATCTGACCAGTGAAGCAGAGGTCGAGATTAAATGCATGGGACAACCGGTGGTCCCTACACTGCAACTGTATAATTTAGTTGACTCGTGGCTGCAAACAGCATCCTCATCACAGCGAATTCCATCAACCATTGGGTCCTCGGCGAAGGATTTTGTTATGGTCCTAGCCTATGCTCGGAAGGTCCCACACCCCTGA 1731 0.4414 MGRHRVLETPGSCSLGRRRPRFRSSKTLPLSKSTKTYVKSSLITPAYIISAPQNSRAAVFNHLRRYRSLGPLLHSTHASYAFYSMFSCSLSHIVYVVFRVFQVNAGDYNDVDVNFGYVRVLIACTGWIRGGERKRWVESDARRRYLTMANQLVKVKSGAIAACMTCPLCNKLFREATTISECLHTFCRKCIYDKITDEELECCPICNIDLGCAPLEKLRPDHSLQDVRAKIFPLKRRKAKAPEVVPSVILPARRKERSISSLVVSTPRVLTQATMTGRRTKPTRKASGLRASSFSIEKPIKKEEDLLEDHLESSSSPDTSNKFTQNTGQSLSPLEANTSLPHKETENGAEPWEAKLDLWKPLNCLVEVASRSKSFKSNVQGCDAKLELVQGNESGSQVQKSKNKEYKRKEKVENEKTDTSPVSLDTAKPNKMRRVRRKKEPLFEESGISPQVVLDATSAKLKKRTGPIWFSLVASEDQEGDAPLPQIPACYVRIKDGSVPVSFIQKYLMKKLDLTSEAEVEIKCMGQPVVPTLQLYNLVDSWLQTASSSQRIPSTIGSSAKDFVMVLAYARKVPHP 576
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi11g0694 576 MobiDBLite consensus disorder prediction 307 348 - -
Glsi11g0694 576 PANTHER E3 UBIQUITIN PROTEIN LIGASE DRIP1 148 572 IPR044807 GO:0004842
Glsi11g0694 576 MobiDBLite consensus disorder prediction 270 294 - -
Glsi11g0694 576 MobiDBLite consensus disorder prediction 400 418 - -
Glsi11g0694 576 ProSiteProfiles Zinc finger RING-type profile. 166 207 IPR001841 -
Glsi11g0694 576 MobiDBLite consensus disorder prediction 391 426 - -
Glsi11g0694 576 MobiDBLite consensus disorder prediction 313 344 - -
Glsi11g0694 576 MobiDBLite consensus disorder prediction 270 290 - -
Glsi11g0694 576 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 150 250 IPR013083 -
Glsi11g0694 576 ProSitePatterns Zinc finger RING-type signature. 182 191 IPR017907 -
Glsi11g0694 576 SUPERFAMILY RING/U-box 162 229 - -
Glsi11g0694 576 CDD RING-HC_PCGF 164 207 - -
Glsi11g0694 576 Pfam Zinc finger, C3HC4 type (RING finger) 166 206 IPR018957 GO:0046872
Glsi11g0694 576 SMART ring_2 166 206 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi11g0694 Glsi-ChrGlsi11 4368366 4375557 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi11g0694 149 495 C3H Transcription Factor Family AT2G30580 54.441 5.94e-113 338
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi02g3094 02 79479592 79484599 Glsi11g0694 11 4368366 4375557 CCT