Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi11g0687 ATGGAAGTTGGGCTGAAGCAGCAGAAGATGGGGTTTGAGGAAACAGAGTTGAGGCTTGGATTGCCTGGAGCCAGTAGCGAAGGAGAAGTTGTGAAGAAGAGAGGATTTTCTGAGACCGAGACTGAGACTGAGAATACTGCTGTGGATTTGATGCTCAATCTGTCGTCCAAGGAAGCAGCTTCTGGGGCCGATCCAAGTGACAAGCCCAAGAGTTTCCCCAAGGAGAAGACCCTTCTGCCTGCCGATCCCGCCAACCCTCCTGCCAAGGCGCAAGTGGTGGGTTGGCCACCAGTGCGATCGTTTCGGAAGAACATGTTGGCAGTTCGAAAGAGCGGCGAAGAGGAGAGTGAGAAAAACAGCCCTACTGCAAGCTTCGTCAAAGTCAGCATGGACGGAGCACCTTATCTCCGCAAAGTGGACTTGAAGATGTACAAGAGCTACCAAGACCTTTCCGATGCATTAGGCAAAATGTTCAGCTCCTTCACCATAGGAAATTATGGATCCCAAGGATTTATGGATTTCATGAATGAGAGTAAGCTGATGGATCTTTTGAACAGCTCCGACTATGTTCCAACCTATGAAGACAAGGATTGCGACTGGATGCTTGTCGGTGATGTCCCATGGGAGATGTTTGTTGAGTCGTGCAAGCGATTGCGTATTATGAAAGGAAAGGAGGCTATTGGACTTGCACCAAGAGCCATGGAGAAATGCAAGAACAGAAGCTAG 726 0.4931 MEVGLKQQKMGFEETELRLGLPGASSEGEVVKKRGFSETETETENTAVDLMLNLSSKEAASGADPSDKPKSFPKEKTLLPADPANPPAKAQVVGWPPVRSFRKNMLAVRKSGEEESEKNSPTASFVKVSMDGAPYLRKVDLKMYKSYQDLSDALGKMFSSFTIGNYGSQGFMDFMNESKLMDLLNSSDYVPTYEDKDCDWMLVGDVPWEMFVESCKRLRIMKGKEAIGLAPRAMEKCKNRS 241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi11g0687 241 MobiDBLite consensus disorder prediction 18 94 - -
Glsi11g0687 241 SUPERFAMILY CAD & PB1 domains 116 222 - -
Glsi11g0687 241 Pfam AUX/IAA family 14 232 IPR033389 -
Glsi11g0687 241 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 10 228 IPR003311 GO:0005634|GO:0006355
Glsi11g0687 241 ProSiteProfiles PB1 domain profile. 123 223 IPR000270 GO:0005515
Glsi11g0687 241 Gene3D - 117 235 - -
Glsi11g0687 241 FunFam Auxin-responsive protein 118 233 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi11g0687 Glsi-ChrGlsi11 4338630 4340497 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi11g0687 113 231 B3 DNA Binding Superfamily AT4G23980 31.933 8.20e-09 53.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Glsi11g0687 AUX_IAA 2.4e-83 CL0072