Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi11g0679 ATGGACACGCACTCGTCGCACGCTGCCGGAACCATTCGTTCCCGTAGCTCGCAGTCCCCTTCTCCTTCCCACTCGGCTTCCGCTTCTGCTACCTCTTCCATCCACAAGCGCAAGCTGGTGTCTGAAGACCACGCTCCTCCTTTCCCACCCTCTTCCTTCTCTGCCGACACTCGTGACGGCGCTTTAACATCCAATGATGACCTCGAGAGCATTTCTGCTCGCGGTGCCGACTCCGACTCCGACGACGAGTCTGAGGACGCCGTTGCTGACGACGACGAGGATGACTACGACAATGACTCCTCCATGCGGACCTTCACCGCCGCAAGGCTTGAGAATTCCACCTCGGCTCCGCGGAACACGAAGCTCAAAACGGATACCAAGATGGATAATTCGGATGGTGCGAAAGACGCTGCAACCGCTGGGGCTGCTACGGTCGGAGCCACTGCCACCGGGAGCTCCGTTCCGGGCATTGTGGTTAAGGAGGACGCAACCAAGATTTTTACAGATAATTTACAGGCAAGTGGGGCTTATAGTGCGAGGGAAGAGAGTCTCAAGCGAGAGGAGGAAGCAGGAAAGCTCAAATTCGTATGCCTTTCAAATGATGGTGTTGATGAGCATATGGTTTGGTTGATAGGATTGAAGAATATTTTTGCTAGGCAACTACCCAATATGCCCAAGGAGTACATTGTCCGACTTGTTATGGATAGAAGCCATAAGTCTGTCATGGTTATAAGACGTAATCAAGTTGTTGGTGGCATTGCATATCGGCCATATGTAAGCCAGAAGTTTGGCGAGATAGCCTTTTGTGCAATAACAGCTGATGAGCAAGTAAAAGGTTATGGTACCAGACTGATGAATCACTTGAAACAGCATGCACGTGATGTGGATGGGCTAACACACTTTCTCACATATGCTGACAATAATGCTGTTGGCTATTTTATCAAACAGGGATTTACGAAAGAGATTCACTTGGAGAAAGAACGATGGCAAGGGTATATAAAGGATTATGATGGAGGAATTCTCATGGAATGCAAGATTGATCCAAAGCTCCCTTACACTGACTTATCAACTATGATTCGTCGTCAGAGGCAGGCAATTGATGAAAAGATAAGAGAGCTGTCAAACTGTCACATTGTTTATCCTGGATATGATTTTCAGAAGAAGGAAGCCGGTATTCCTAGAAAAATAACCAAAGTTGAGGATATCCCTGGTTTGAGAGAGGCTGGATGGACTCCTGATCAGTGGGGTCATTCACGATTTAGAGCTCTAAGTATTTCGACAGACAGTACTACAAATCAAAAACATTTGACTGCGTTTATGCGTTCACTTCTAAAGTCAATGCACGATCATGCTGATGCGTGGCCATTCAGGGAACCAGTTGATGCACGCGATGTTCCTGATTATTATGACATCATCAAAGATCCAATGGATCTGAAGACAATGTCAAAGAGGGTGGAGTCGGAGCAATATTATGTGACATTCGAGATGTTCGTTGCGGATGCGAGAAGAATGTTTGCCAATGCACGCACCTACAACTCTCCAGAGACCATTTATTTCAAATGTTCTACGAGGCTTGAAGGCCATTTTCATACCAAGGTTCAAGCAGGTCTTCAATCTGGTTCCAAAATTCAGTAG 1635 0.4691 MDTHSSHAAGTIRSRSSQSPSPSHSASASATSSIHKRKLVSEDHAPPFPPSSFSADTRDGALTSNDDLESISARGADSDSDDESEDAVADDDEDDYDNDSSMRTFTAARLENSTSAPRNTKLKTDTKMDNSDGAKDAATAGAATVGATATGSSVPGIVVKEDATKIFTDNLQASGAYSAREESLKREEEAGKLKFVCLSNDGVDEHMVWLIGLKNIFARQLPNMPKEYIVRLVMDRSHKSVMVIRRNQVVGGIAYRPYVSQKFGEIAFCAITADEQVKGYGTRLMNHLKQHARDVDGLTHFLTYADNNAVGYFIKQGFTKEIHLEKERWQGYIKDYDGGILMECKIDPKLPYTDLSTMIRRQRQAIDEKIRELSNCHIVYPGYDFQKKEAGIPRKITKVEDIPGLREAGWTPDQWGHSRFRALSISTDSTTNQKHLTAFMRSLLKSMHDHADAWPFREPVDARDVPDYYDIIKDPMDLKTMSKRVESEQYYVTFEMFVADARRMFANARTYNSPETIYFKCSTRLEGHFHTKVQAGLQSGSKIQ 544
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi11g0679 544 Pfam Bromodomain 441 523 IPR001487 GO:0005515
Glsi11g0679 544 SMART bromo_6 429 538 IPR001487 GO:0005515
Glsi11g0679 544 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 201 352 IPR016181 -
Glsi11g0679 544 FunFam Histone acetyltransferase KAT2A 190 354 - -
Glsi11g0679 544 PANTHER GH11602P 91 541 IPR037800 GO:0004402
Glsi11g0679 544 MobiDBLite consensus disorder prediction 56 71 - -
Glsi11g0679 544 MobiDBLite consensus disorder prediction 1 135 - -
Glsi11g0679 544 Pfam Acetyltransferase (GNAT) family 240 318 IPR000182 GO:0016747
Glsi11g0679 544 ProSitePatterns Bromodomain signature. 453 511 IPR018359 -
Glsi11g0679 544 CDD NAT_SF 240 294 - -
Glsi11g0679 544 PRINTS Bromodomain signature 451 464 IPR001487 GO:0005515
Glsi11g0679 544 PRINTS Bromodomain signature 500 519 IPR001487 GO:0005515
Glsi11g0679 544 PRINTS Bromodomain signature 465 481 IPR001487 GO:0005515
Glsi11g0679 544 CDD Bromo_gcn5_like 436 535 - -
Glsi11g0679 544 SUPERFAMILY Bromodomain 418 534 IPR036427 GO:0005515
Glsi11g0679 544 ProSiteProfiles Bromodomain profile. 448 519 IPR001487 GO:0005515
Glsi11g0679 544 MobiDBLite consensus disorder prediction 101 121 - -
Glsi11g0679 544 MobiDBLite consensus disorder prediction 79 98 - -
Glsi11g0679 544 Gene3D - 189 353 - -
Glsi11g0679 544 Gene3D - 422 540 IPR036427 GO:0005515
Glsi11g0679 544 ProSiteProfiles Gcn5-related N-acetyltransferase (GNAT) domain profile. 193 347 IPR000182 GO:0016747
Glsi11g0679 544 MobiDBLite consensus disorder prediction 1 35 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi11g0679 Glsi-ChrGlsi11 4289264 4297573 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR GNAT Glsi11g0679 Bromodomain 1.6e-20 No_clan