Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi11g0661 ATGTTTCCCGGAGCCATGTCCAATTCGACCTTTTTGTCCGAAGAAGTTCAAAATTTGAGTGGAATGAACCACGTAGTTTCTACCATTTCTCCAGAGCAGACTGAACAGATAGAGAGAAAGAGAAATCTCCCTGGAAACCCAGACTCAGACGCTGAAGTGATTGCGTTATCCCCGAAGACCCTTCTAGCCACCAATATATTTGAGTGTGAGATCTGCAACAAGGGTTTTCAGAGACATCAGAACCTTCAGCTTCATAGGAGAGGCCATAACCTTCCATGGAAGCTGAACCAAAGAAAGAGCAAATTAGGGGTCAAAAAGAGAGCCTACGCTTGCCCTGAGCCTGCATGCATTCACCACAATCCCTCAAGGGCTCTGGGTGATCTTACAGGAATTAAGAAACACTACTGCAGAAAACATGGAGAGAAGAAGTGGAAATGTGACAGGTGCTCCAAATTCTACTCGGTTCAGTCAGACTGTAGAGCTCACTCTAAAAGCTGTGGAACTAGAGAATATAGATGTGATTCCGGAACCCTTTTCGATCGCTAG 546 0.4524 MFPGAMSNSTFLSEEVQNLSGMNHVVSTISPEQTEQIERKRNLPGNPDSDAEVIALSPKTLLATNIFECEICNKGFQRHQNLQLHRRGHNLPWKLNQRKSKLGVKKRAYACPEPACIHHNPSRALGDLTGIKKHYCRKHGEKKWKCDRCSKFYSVQSDCRAHSKSCGTREYRCDSGTLFDR 181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi11g0661 181 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 26 181 IPR031140 -
Glsi11g0661 181 SMART c2h2final6 109 139 IPR013087 -
Glsi11g0661 181 SMART c2h2final6 67 89 IPR013087 -
Glsi11g0661 181 Pfam Zinc-finger double-stranded RNA-binding 67 89 IPR022755 -
Glsi11g0661 181 Gene3D Classic Zinc Finger 45 115 - -
Glsi11g0661 181 ProSiteProfiles Zinc finger C2H2 type domain profile. 67 89 IPR013087 -
Glsi11g0661 181 ProSitePatterns Zinc finger C2H2 type domain signature. 69 89 IPR013087 -
Glsi11g0661 181 SUPERFAMILY beta-beta-alpha zinc fingers 66 164 IPR036236 -
Glsi11g0661 181 MobiDBLite consensus disorder prediction 30 49 - -
Glsi11g0661 181 FunFam protein indeterminate-domain 12-like 46 115 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi11g0661 Glsi-ChrGlsi11 4164158 4164785 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi11g0661 16 181 IDZ Gene Family AT4G02670 70.659 1.25e-86 258
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Glsi11g0661 zf-C2H2_jaz 1.9e-05 CL0361