Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi11g0660 ATGAATTATCAGTATCCGGTGAAAGAAGAGTACTTGGAACCGTCTTCGTCTCAATCAGGAGGGGAACCCCCAATGATTCCCCCTCCGCAGCCAATGGAGGGACTTCACGACGTAGGACCACCACCATTTCTGACCAAGACGTTCGATGCGGTGGACGACCCAACAACCAATTTCGTAGTTTCGTGGAGCAGAGGTGGCTCCAGCTTTGTCGTTTGGGATCCACATGCCTTCTCTACAAGTCTCCTTCCCAGATACTTCAAGCACAACAATTTTTCAAGCTTTGTCAGGCAATTAAACACTTATGGTTTTAGAAAAATTGATTCAGATAAATGGGAGTTTGCAAATGAAGGATTCCTCAGAGGCCACAGGCATCTTTTGAGGAACATAAGAAGGAAGGCACCTTCTCAGCCTACTCTTTCCCAACAAGCACAAGGTCACTGTGTTGAAGTTGGTAGGTTTGGGCTAGATGAAGAAATCGATCGTTTGAGGCGGGACAAGCAGGTGTTAATGATGGAGCTCGTGATGCTTAGGCAGCAGCAACAGAATACTAGAGCTAACCTTCGGGCAATGGAGCAAAGGTTACAAGGCACAGAAATTAAGCAGCAACAAATGATGGCTTTCTTAGCCAGAGCTATGAAAAATCCAACCTTTCTCCACCAACTACTCCAACAGAAAGACAAGAGAAAGGAGCTTGAAGATGCCATAACTAAGAAGAGGAGAAGGCCGATTGAGCAAGGATCTAGTGGTGTAGGCGAATCAAGCAGGAATCCTGGAAAAGCTGAGGCCCAAGAATTTAGGGACAATGGGTTTGAAGTGTCAGAGCTGGAAGTGCTAGCTATGGAAATGCTGGGTTTTGGTAGGGGAAGAAGAGAACAGGAGAAAGGAAAGGAAGCGGGAGAACCAGAGGAGAGGCTGGACAAAGAACTTGATGAAGGTTTCTGGGAAGAACTGTTTAGTGAAAATTATGAGGGTGAATTTGACATTCCAAGCACTGAAGGTGAGGGTGAAGATGAAGATGTGAGTGTCTTGGCCCATCGCTTGGGTTACTTGGATTCGAGTCCTAAGTAA 1068 0.4616 MNYQYPVKEEYLEPSSSQSGGEPPMIPPPQPMEGLHDVGPPPFLTKTFDAVDDPTTNFVVSWSRGGSSFVVWDPHAFSTSLLPRYFKHNNFSSFVRQLNTYGFRKIDSDKWEFANEGFLRGHRHLLRNIRRKAPSQPTLSQQAQGHCVEVGRFGLDEEIDRLRRDKQVLMMELVMLRQQQQNTRANLRAMEQRLQGTEIKQQQMMAFLARAMKNPTFLHQLLQQKDKRKELEDAITKKRRRPIEQGSSGVGESSRNPGKAEAQEFRDNGFEVSELEVLAMEMLGFGRGRREQEKGKEAGEPEERLDKELDEGFWEELFSENYEGEFDIPSTEGEGEDEDVSVLAHRLGYLDSSPK 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi11g0660 355 MobiDBLite consensus disorder prediction 1 37 - -
Glsi11g0660 355 SUPERFAMILY "Winged helix" DNA-binding domain 39 132 IPR036390 -
Glsi11g0660 355 PRINTS Heat shock factor (HSF) domain signature 81 93 IPR000232 GO:0003700|GO:0006355|GO:0043565
Glsi11g0660 355 PRINTS Heat shock factor (HSF) domain signature 43 66 IPR000232 GO:0003700|GO:0006355|GO:0043565
Glsi11g0660 355 PRINTS Heat shock factor (HSF) domain signature 94 106 IPR000232 GO:0003700|GO:0006355|GO:0043565
Glsi11g0660 355 MobiDBLite consensus disorder prediction 288 308 - -
Glsi11g0660 355 SMART hsfneu3 39 132 IPR000232 GO:0003700|GO:0006355|GO:0043565
Glsi11g0660 355 MobiDBLite consensus disorder prediction 235 267 - -
Glsi11g0660 355 Pfam HSF-type DNA-binding 43 132 IPR000232 GO:0003700|GO:0006355|GO:0043565
Glsi11g0660 355 MobiDBLite consensus disorder prediction 21 36 - -
Glsi11g0660 355 ProSitePatterns HSF-type DNA-binding domain signature. 82 106 IPR000232 GO:0003700|GO:0006355|GO:0043565
Glsi11g0660 355 FunFam Heat shock transcription factor 1 36 133 - -
Glsi11g0660 355 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 29 255 IPR027725 -
Glsi11g0660 355 Coils Coil 159 200 - -
Glsi11g0660 355 Coils Coil 221 241 - -
Glsi11g0660 355 Gene3D - 36 133 IPR036388 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi11g0660 Glsi-ChrGlsi11 4155893 4157763 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi11g0660 22 353 HSF AT3G22830 51.762 3.30e-122 356
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Glsi11g0660 HSF_DNA-bind 7e-31 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi02g3128 02 79759630 79762624 Glsi11g0660 11 4155893 4157763 CCT