LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Glsi11g0659	ATGATACCGGCATCCGGATTTCGGCACTTACTCGCATTAGGGTTTCTGATTTCTTCCGCAATTCCCTTCGCTTACGGAGAATCGTCTACCTGTTTGATCGTCTACAAAAAAGGTGGGGCTCCGGCGGTTTTCCAATCCCCGAAATGTCCCCGCTGGAATCTCTTCGATTACGATCCTCGCTCACAAACCACGGTGCGTTGTCAGTCCGCAATGCTTCGGGGCCGAAGGAACTCTCAGGAGGATCGCGCTCTCTGTGTCCTCGATATTCGCATTCCCTTCCCTGGTAAATTGGGGATCAAGGAAGTTATGGTTGGAATTGTAGCTGTTTTTGATGGTCATAATGGCGCAGAAGCTAGTGATATGGCTTCAAAACTTTTGGTGGAGTATTTTGTTTTGCACACTTATTTTCTTTTGGATGCAACATATTCAGTTTTATCGAAGACATCAACAGGAAGATTGCCTCATAAGAGAGACTGTGATGAAGCAAAACAGCTACGCAAGTGGGAAGAGATTCTTGATTGGCATAAGCTGCATTTTGGAAGGTTTGAGAATAAATTTTCAGCAAATTTTGATGATTCTTTCCACTTAGAAATATTGAAGGAAGCATTGTTGAGAGCAATACATGATATTGATGCAAAGTTTTCTGAGGAAGCATCTAGAAATAGTCTCAATTCAGGTTCTACAGCGACTGTTATATTAATTGCAGATGAGAAAATTTTGGTTGCCAATATTGGAGACTCTAAGGCCTTCTTGTGCACTGAAAAGTTTCTGTCTCCTAGAGAGGCAAAAGCGTCATTATTAAAGCTATATAGGCAGAAAGAGCGCGATGGTTCTGTTTCCCATGTGTGGGATCGTGAAAAGTATAAATTGGCTTCCTCCCGCGGACTCACTCACTTTGAAGCAAAGGAATTGACCAATGATCATCATCCAGACAGAGAAGATGAAAAAATTCGGGTGGAAACAGCTGGTGGTCAAGTTCTTAATTGGGGTGGTGTGCCTCGCATTAATGGTCAGCTGGCTATTACACGAGCTATTGGTGATGTATCTTTTAAAAGTTATGGTGTTATATCTGCCCCAGAGGTGACAGATTGGCAGCCTCTGACTGCCAATGATAGCTATTTGGTTGCTGCATCTGATGGTGTTTTTGAGAAGATGAGTTCACAGGATGTATGTGATTTGTTGTGGGAAGTACACAGTTACAGTAACATGAGATCAGAGTTTTCCCCTTCATGCTCCTATTCATTGGCAGATTGCATTGTTAACACTGCCTTCAGAAAAGGCAGTATGGACAATGTGGCAGCAGTTCTGGTTCCTCTGGAATCTGCTACTTTTTCTGAAAACTTGTTTGGGAGAAGCGATATTGAAAAGAGGGACATAGATGTTCCACTACTTGGACTGCGGGAATTTGCTTCCAGAAGCTCAGCTAATGGCATTACAACTGATATAATGCAATGGGAGCGTCTGCATCCAGTGGATACCAAATTTCAGCGAATATTGGCTGAAGTGAAAAATGGTGACGTTGGATGTTTTTATTTATCTGAAAATCTTGATGAAGCTATGGACTATGGGCAGCCTGCTAAAAAGGTTGACTGGTCATTAGACTATTTACATAAATTACCACAGTCTTTACCAGATATGCCTCATCAACATTCTGGTGGTCCTGTAAATTTGTACAATAATCAAAATTTTTGCTTTCACCTTGGCATGACTGTCAATGGAGCCAAAGAGCAATGCATAAATCCTGAGGGCTTTGCTAGTTTTCTTGGCCTGCTTGAATCAATTCCCTTACATGATACTGGTTCAAATAATGGGTCTTTTGACCATTCAATGCCTCATATGAGGTATGTTCTAAAGAAGAGGTTTGGTCGTGGATCATATGGTGAAGTATGGTTGGCTTTTCATTGGAACTGTCATCAAGGTGGCAATGCTTCAAAGTTGAGCAAGGACAACAATAATGTCTCTCTTAGCTTTATCGATTTTGACTCGTACAATAGAAATAGTAGCTCAAGTACTCATGATTGCCAGAATGGTCCTTCTAACCACAACTTGTACATTTTGAAACGTATAATGGTAGAGAGAGGGGCTGCTGTTTACTTAAGTGGTCTGAGGGAGAAGTATTTTGGAGAAATTTTCTTAAATGCCTCTACATGCTTTGAAGATCTTCTTTCAGCTGAAAAATTAAACTGTGTTATGAAAATATCACAATTCAGTTCTTATGACCGACTAAAAGCAAATGAATTTATGTTCCATAACATAAAAGACCCTGGGAGTTCTGAGAATTTATTTCCAAACAAATCCCGGTTGCAGAGGGCCATCAATGAAGAAGGTCTGAACCATATTGCAAGATATGTGGAGTCTTTTGAGTCTCAATCTAATGAAATATGGCTTGTATTCCATTATGAAGGCATGTCTTTGTCAAAACTTATGTATACTGTGGAAGAAGCATATGATACTGCTGAGGATGAAAGAACTGAGCAAGGGAAACATGTTCAGATACTACGACCATCAAAGTGGTGGCATTGGTTGAAGACAACAGAAGAAGGGCAAGAGGAAATGCGCAACCTTATATGGCAGCTGCTAATGGCACTTAAGTCCTGTCATGATCGCAATATCACGCACAGGGATATCAAACCTGAGAACATGGTGATATGCTTTGAAGATCAGGAGACTGGAAGATGCCTAAAAGAGATTCAAACAATTAATACAAAAATATCTACAAAAATGCGTATTATCGACTTTGGCAGCGCAATTGATGAATTTACATTGAAGCACTTATATGGTTCTACTGGGCCTTCTCGAGCTGAGCAAACTTATGAGTATGTGCCTCCTGAAGCTTTACTAAATGCTACTTGGTATCAAGGACCAACAAGCTCAACCTTGAAATATGACATGTGGAGTGTTGGTGTTGTGATGTTAGAGTTGGTCTTAGGGACGCCAAATGTTTTCCAGATAAATTCTTTAACACATACTCTTTTGGACCGGCATCTTGAGGGCTGGAATGAGGGCGTAAAGGAGCTGGCATACAAACTTCGATCATTCATGGAATTGTGTATATTAATGCCTGGGATTTCTGGCAGTTCCTTTAAACAGTATCACACAATGAACCAAGTTGGAGCTCCACCTGCATCCTGGAAATGCTCTGAGGAATTCTTCTCTCATCAAATTAAGAGTCGGGATCCTCTTAAATTAGGGTTTTCAAATATCTGGGCATTACGATTAGTGCGTCATTTATTATTCTGGGACCCAGAAGATCGATTAAGTGTTGACGAGGCATTGCAGCATCCCTATTTCCAAACTCCCCCAAGTGGGTGA	3312	0.41	MIPASGFRHLLALGFLISSAIPFAYGESSTCLIVYKKGGAPAVFQSPKCPRWNLFDYDPRSQTTVRCQSAMLRGRRNSQEDRALCVLDIRIPFPGKLGIKEVMVGIVAVFDGHNGAEASDMASKLLVEYFVLHTYFLLDATYSVLSKTSTGRLPHKRDCDEAKQLRKWEEILDWHKLHFGRFENKFSANFDDSFHLEILKEALLRAIHDIDAKFSEEASRNSLNSGSTATVILIADEKILVANIGDSKAFLCTEKFLSPREAKASLLKLYRQKERDGSVSHVWDREKYKLASSRGLTHFEAKELTNDHHPDREDEKIRVETAGGQVLNWGGVPRINGQLAITRAIGDVSFKSYGVISAPEVTDWQPLTANDSYLVAASDGVFEKMSSQDVCDLLWEVHSYSNMRSEFSPSCSYSLADCIVNTAFRKGSMDNVAAVLVPLESATFSENLFGRSDIEKRDIDVPLLGLREFASRSSANGITTDIMQWERLHPVDTKFQRILAEVKNGDVGCFYLSENLDEAMDYGQPAKKVDWSLDYLHKLPQSLPDMPHQHSGGPVNLYNNQNFCFHLGMTVNGAKEQCINPEGFASFLGLLESIPLHDTGSNNGSFDHSMPHMRYVLKKRFGRGSYGEVWLAFHWNCHQGGNASKLSKDNNNVSLSFIDFDSYNRNSSSSTHDCQNGPSNHNLYILKRIMVERGAAVYLSGLREKYFGEIFLNASTCFEDLLSAEKLNCVMKISQFSSYDRLKANEFMFHNIKDPGSSENLFPNKSRLQRAINEEGLNHIARYVESFESQSNEIWLVFHYEGMSLSKLMYTVEEAYDTAEDERTEQGKHVQILRPSKWWHWLKTTEEGQEEMRNLIWQLLMALKSCHDRNITHRDIKPENMVICFEDQETGRCLKEIQTINTKISTKMRIIDFGSAIDEFTLKHLYGSTGPSRAEQTYEYVPPEALLNATWYQGPTSSTLKYDMWSVGVVMLELVLGTPNVFQINSLTHTLLDRHLEGWNEGVKELAYKLRSFMELCILMPGISGSSFKQYHTMNQVGAPPASWKCSEEFFSHQIKSRDPLKLGFSNIWALRLVRHLLFWDPEDRLSVDEALQHPYFQTPPSG	1103

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Glsi11g0659	1103	SMART	PP2C_4	58	437	IPR001932	-
	Glsi11g0659	1103	CDD	PP2Cc	73	439	IPR001932	-
	Glsi11g0659	1103	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	871	883	IPR008271	GO:0004672\|GO:0006468
	Glsi11g0659	1103	Gene3D	Transferase(Phosphotransferase) domain 1	839	1098	-	-
	Glsi11g0659	1103	FunFam	uncharacterized protein LOC106771884 isoform X8	837	1098	-	-
	Glsi11g0659	1103	ProSiteProfiles	Protein kinase domain profile.	615	1097	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Glsi11g0659	1103	SMART	serkin_6	615	1097	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Glsi11g0659	1103	SUPERFAMILY	Protein kinase-like (PK-like)	614	1099	IPR011009	-
	Glsi11g0659	1103	Pfam	Protein phosphatase 2C	198	431	IPR001932	-
	Glsi11g0659	1103	PANTHER	PROTEIN PHOSPHATASE	66	438	IPR015655	GO:0004722\|GO:0006470
	Glsi11g0659	1103	ProSiteProfiles	PPM-type phosphatase domain profile.	66	439	IPR001932	-
	Glsi11g0659	1103	SUPERFAMILY	PP2C-like	62	440	IPR036457	-
	Glsi11g0659	1103	Gene3D	-	61	445	IPR036457	-
	Glsi11g0659	1103	Pfam	Protein kinase domain	830	1097	IPR000719	GO:0004672\|GO:0005524\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Glsi11g0659	Glsi-ChrGlsi11	4138777	4153239	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Glsi11g0659	691	1102	PP2C-type Phosphatase Gene Family	AT3G63340	61.298	4.18e-173	511

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	CMGC_GSKL	Glsi11g0659		Pkinase	2.8e-26	CL0016