Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi11g0640 ATGAGAGAGGGGTTGAGATCTCGGAAGCGACTGGAGAATCCGGAGGAACACAAGGTTTCTGAGAGGGGAGTAGTTCATAAGAAAGGGCATGTCATCAAGCAAGAGGTTCTTGATTTTAGTGGTGAGGGTTTGGCGCACGAAAGAGAGGCGTTAAACTTGACAATTGAGAAGAAGGAAGTGGAGGAAGTAGTAAAAGAAGAATGTGAATTGGGTAGGGATATGGGCACGAGTAGAAATGTTGGGCTATTTGAGAATGGGAACGATAGTAGGGTTTTAAGTTGTGGTAAGAACATTGAGAGGAAGTTTGAGAAGGAAGAGGACTCTAATGATAAATTCCAAATTGGTGGTCGAGTATTACGTTCAAGGTTAAAGAGAGGAGATGGTAAGAAATCTAGTAATGAAGAGAACAATGTTGTGCTATGTAGACCACGTGCTGGGTTTGAGAAGATACAGGTTAAGGCAGAAGAGGTAGAAACCAGAGAATATATTAGTAATGGTTATGAGAAGAAAAAAGTTAAGGAGAATAAGGAAGGCAATGACAAAATGGAGTTCAAACGGAAGCGCGGGAGGCCCCCCAAAATGGAGATGAAAGAACAGGATCGTAAGTTGCAACAGAAGCATGGAATGCCATCCAAGGCTGGGCAAAATTATAATCTCATGAAAGTGGCACATACTGGAAAAGGAAAAGTGGGCTTTCAAAAAGGTAAAAAAAGTTTCACTATGAGAGATGGTGCTAATACGAATTCAATTGACATGTGCTCAAAAGGGAGATCTTTTGGGAAGGAGTTAAAAAGGGTGGCTTTTTCTCCTGTAAAAACTGAGAACAATGAGGTAGCATCACCGTTGAGATCAAATTCTTTTAATGTGCCTCTTGCTGAGAAATGTGTAAAGAGTAAAGCAAAGCAATTAGTGAGGGAAAAAATAATGGAACTGCTGACAGCTGCAGGCTGGACTGTTGACTATAGACCCAGGAATGGCAGAATCTACAACGATGCAGTGTATGTTAGTCTAGACGGAAGGACTCACTGGTCAATTACCTTGGCCTACAAGAGGCTTAAAAGGCATTTTGAAGATGGTGATGGTGCAGGTAAGGTATATGGGCCAGGTTTTGAATTTGCACCTATACCAGAAGAGGAATTTAAGACATTAACTAAGGTAATGAGCAAGAAAAGAGCAAGCAAAAAGAAATTGAAACAAAAAGGGGGAAAGGGTGTAAATAAAGTTACTGGAGTCACTAGCAAGTTGAAAAGAGAAAAACAAGGCTCTTTTGCAAGCCTGGGTAAGTCAATGAAGGGAAAAACAAAGAGGAAATGGTCACTTATGGAGGAGGATAATACAGATGTTACATCGCCTAGCAGAATGGTGCTGGTTAAGGATCATAAGCGACAGAAAACACAAAACAAGAAGCGATGTGCTCTTTTGGTTCGTGATGCTGATAAAGAGGTAGATTCAGAAGTTGATGGATATGTACCTTACAATGGAAAACGAACCGTGCTTGCCTGGATGATTGATATGGGAACAGTCTTGCAAAATGGGAAGGTTTATTATATGAACCAGAGTAGGAAATGTGCAGTGTTGGAGGGTAGGATAACAAGAGATGGCATTCATTGTGACTGCTGTGATGAAATTGTAACAATTTCAGAGTTTGAAGCTCATGCAGGAAGCAAACTCTCTGATCCACTTAAGAAGATATATATAGAGGGAGGAACTTCTCTCTTGCAATGCCTGCTAGACTCATGGAATAAACAAGATGAATCTGAACGTAAAGGTTTTCATTTCATTGATGTTGCTGGTGAAGACCCTAATGATGATACATGTGGTGTCTGTGGAGATGGTGGAGACCTGATCTGTTGCGATGGTTGCCCATCAACATTCCATCAAAATTGCTTGGGTATAAAAAAATTTCCATTCGGTGACTGGCACTGCATTTATTGCTGTTGCAAATTTTGTGGTCTGGTTGGTGGAAGTACAAACCAAAGTGACGACTATAATGATTTTACTGGGTCTGCATTACTTACATGCCATTCATGCGAACAAAAATATCATAGATCCTGTATTGAGGTGGATGATGCCCAGACTGATGTTTCCAGTGATTCATTTTGTGGAAACGGATGCCAAGAGTTATCTGAGAGACTCAAAATTCTTCTTGGGGTTAAACATGAAATTGGAGATGGATTTTCTTGGACTTTTATGCACCGGTCAGATGTTGGCTCAGATGCTTGTCAGATAGAATCTCAGATGGTTGAATGTAATTCCAAGCTAGCTGTTGGATTACTGATAATGGATGAATGCTTCATGCCTTATATTGATCATAGAAGTGGGATTAATCTGATCCACAGTATTCTTTATAATCGTGGGTCAAACTTCAACCGCCTAAACCATAGTGGATTTATTACTGCCATTCTAGAGAGAGGGGACGAAATTATCTGTGCTGCGTCTATTAGGATCCATGGGAACCAACTAGCAGAGATGCCCTTTATTGGAACACGCTCTATGTATAGGCGACAAGGAATGTGCCGCCGGCTTCTAAGTGCCATTGAACATGCACTCAGCTCTCTAAATGTTGGGTTATTGGTAATACCAGCTATTGCAGAACTCAGAGAAACTTGGACTTCCGTTTTTGGGTTTGAGCCACTTGACCTGACTAGCAATCAAATCATAAAGAACATGAATCTGTTGGTATTCCCTCATGTAGATATGTTACAGAAAAAGATACCAAAGCATAGTCTTGATGATGCAAATCTGATTTCTGCAGAAGTTTCCTATCGTCAACTTCAGAAGAATCAGAAACTGCATGAGGTGACAAGTAATTGTCATGAGGCTGGCTCATCTGGACTTGATATGATCGTTTCTGCTGGGCTTACTGCCTCAAATTCATGCCAGATGCATGTTAAATCCAGTTCTATTGAATCTGGTTCTCAGCTTCCGGATGGCCCATTCAATAACACACTTGTTTTTGATAGTGAGAAAGATGTAGAGTGTCAAGTTGTCTGTCATGCTGTCTATGATAATTTGACAGTGGAAGACAAAGGAACTATAAAAGGCCCTGATTATGTGAGCAATGCTCATTGCCAAACTGAAGACATAAATTCATGTCAGAATGCTAATTCTAGTTGCATCATCCTGGCTCATGATGAGAAGACAGTAGATTTAGATAACCCATTGAACAATTGCCGTGTGTCTGAGGAGGGAAGGAAATTTCTCACAGTATCTCATATTAGCTCCAGAATTACCAAAGAAGAACATTATGCTGGTGCTCCCTCCCTGGGTACTGAAAATATTCCCAATGAGGCAAAAATAGCAGATGAAACTGTTACAAATAGCAACAGTTCTGAGGATTCTCCACACCACTTGTCAGAAAGTATTCCTCTTGGATCACAGATTGTGTCTTGTACTATAGAATCAAAAGATTCTGCTGACAATATTTACCATGATTCAAATAATATAATTCCATGTACGGATGATTCAGGAACTTGGTCTCGTGGTTCTCAGAAATTCCAGGTTGCAGAATGTGATTTTTGTTCACATGAAAATTCTAACAGTTGTGAACTGATAAGCAATCATGACTTTGTCCAGCCCTTCTCTATAGGATCAAAAGAATTGCATTCTGAATCTATCAATGGTTGTGGTTGTCAGTGTAGACCCAATGGAGCTTGTGTGTCTGGCGAAGTAGCTCTTCCAACTGGCAACTTGATGCATGGTAGAGCACACAGCTTTACTGAAGATTTACCCGTTAATTGCATTAAACCTTCCAGTGTGGTTAGTGAGCCAAATGCTGATGAAGCAGAAGTGTATGCTGCCAAGACACCCAATCTCCATACTCACATAAATTCTGGAGATTGCCAATCCATAAAAATGGCTTCAGATTCTTGTGAGGAGATTGCAAATGGTGTCAATGAGAGCAGTAAAGCATCTAGTGTAACTGAGTTCAATTTTCTTCCAGCTGATAGGAACTTAGTTCTCAACAATGACAGTTGGGTGGACCACTCTTCGGAGCAACCTGAGCCTGGTTTACAGGTTGATAAAGCTGCACAGAGTAATGCTCCATCCTCTTGTAGCCCAAACACTGCCGGCGTGGCTCTTCACTGTGCATCTGCCGGTGGTGCTTCATGTGGTAGTACTGAGGTGATAGTTTTGTCAAACCAAGCCAGTTGA 4155 0.4096 MREGLRSRKRLENPEEHKVSERGVVHKKGHVIKQEVLDFSGEGLAHEREALNLTIEKKEVEEVVKEECELGRDMGTSRNVGLFENGNDSRVLSCGKNIERKFEKEEDSNDKFQIGGRVLRSRLKRGDGKKSSNEENNVVLCRPRAGFEKIQVKAEEVETREYISNGYEKKKVKENKEGNDKMEFKRKRGRPPKMEMKEQDRKLQQKHGMPSKAGQNYNLMKVAHTGKGKVGFQKGKKSFTMRDGANTNSIDMCSKGRSFGKELKRVAFSPVKTENNEVASPLRSNSFNVPLAEKCVKSKAKQLVREKIMELLTAAGWTVDYRPRNGRIYNDAVYVSLDGRTHWSITLAYKRLKRHFEDGDGAGKVYGPGFEFAPIPEEEFKTLTKVMSKKRASKKKLKQKGGKGVNKVTGVTSKLKREKQGSFASLGKSMKGKTKRKWSLMEEDNTDVTSPSRMVLVKDHKRQKTQNKKRCALLVRDADKEVDSEVDGYVPYNGKRTVLAWMIDMGTVLQNGKVYYMNQSRKCAVLEGRITRDGIHCDCCDEIVTISEFEAHAGSKLSDPLKKIYIEGGTSLLQCLLDSWNKQDESERKGFHFIDVAGEDPNDDTCGVCGDGGDLICCDGCPSTFHQNCLGIKKFPFGDWHCIYCCCKFCGLVGGSTNQSDDYNDFTGSALLTCHSCEQKYHRSCIEVDDAQTDVSSDSFCGNGCQELSERLKILLGVKHEIGDGFSWTFMHRSDVGSDACQIESQMVECNSKLAVGLLIMDECFMPYIDHRSGINLIHSILYNRGSNFNRLNHSGFITAILERGDEIICAASIRIHGNQLAEMPFIGTRSMYRRQGMCRRLLSAIEHALSSLNVGLLVIPAIAELRETWTSVFGFEPLDLTSNQIIKNMNLLVFPHVDMLQKKIPKHSLDDANLISAEVSYRQLQKNQKLHEVTSNCHEAGSSGLDMIVSAGLTASNSCQMHVKSSSIESGSQLPDGPFNNTLVFDSEKDVECQVVCHAVYDNLTVEDKGTIKGPDYVSNAHCQTEDINSCQNANSSCIILAHDEKTVDLDNPLNNCRVSEEGRKFLTVSHISSRITKEEHYAGAPSLGTENIPNEAKIADETVTNSNSSEDSPHHLSESIPLGSQIVSCTIESKDSADNIYHDSNNIIPCTDDSGTWSRGSQKFQVAECDFCSHENSNSCELISNHDFVQPFSIGSKELHSESINGCGCQCRPNGACVSGEVALPTGNLMHGRAHSFTEDLPVNCIKPSSVVSEPNADEAEVYAAKTPNLHTHINSGDCQSIKMASDSCEEIANGVNESSKASSVTEFNFLPADRNLVLNNDSWVDHSSEQPEPGLQVDKAAQSNAPSSCSPNTAGVALHCASAGGASCGSTEVIVLSNQAS 1384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi11g0640 1384 MobiDBLite consensus disorder prediction 173 213 - -
Glsi11g0640 1384 ProSiteProfiles Zinc finger PHD-type profile. 603 648 IPR019787 -
Glsi11g0640 1384 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 595 663 IPR013083 -
Glsi11g0640 1384 ProSiteProfiles Gcn5-related N-acetyltransferase (GNAT) domain profile. 756 905 IPR000182 GO:0016747
Glsi11g0640 1384 CDD PHD2_CHD_II 606 645 - -
Glsi11g0640 1384 PANTHER PHD FINGER PROTEIN 12 280 1052 IPR042163 GO:0003714|GO:0045892
Glsi11g0640 1384 CDD NAT_SF 801 860 - -
Glsi11g0640 1384 Pfam Tify domain binding domain 528 577 IPR032308 -
Glsi11g0640 1384 SMART PHD_3 605 646 IPR001965 -
Glsi11g0640 1384 SMART PHD_3 647 706 IPR001965 -
Glsi11g0640 1384 MobiDBLite consensus disorder prediction 173 207 - -
Glsi11g0640 1384 MobiDBLite consensus disorder prediction 1328 1351 - -
Glsi11g0640 1384 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 793 885 IPR016181 -
Glsi11g0640 1384 MobiDBLite consensus disorder prediction 1 23 - -
Glsi11g0640 1384 SUPERFAMILY FYVE/PHD zinc finger 598 651 IPR011011 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi11g0640 Glsi-ChrGlsi11 4022101 4030892 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi11g0640 142 913 PHD Transcription Factor Family AT5G36670 41.022 0.0 589
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi02g3163 02 80023118 80033147 Glsi11g0640 11 4022101 4030892 CCT
Glsi11g0640 11 4022101 4030892 Glsi11g0640 11 4022101 4030892 ECH