Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi11g0622 ATGGGTGCTCCACTAAGTAGCAGGCTGCAGGCTGCTGTGCAATCGGTTCAGTGGACTTATAGTCTCTACTGGCAACCTTGTCCCCAACAAGGGGTTCTGGTGTGGGGTGATGGGTACTACAATGGGGCAATTAAGACTCGGAAAACAGTGCAATCAATGGAGGTTAGCGCGGAGGAGGCGTATCTCCAAAGAAGCCAGCAACTTAGAGAGCTCTATGGATCATTGTCCGCCCGAGAGACCAACCCCCCAACACGACGCCCTTGTGATGCCTTGTCCCCGGAGGACCTAAGCGAATCCGAATGGTTCTATTTGATGTTACCGGGAAAGGCATATGCCAGGAGGCAACATGTATGGCTCGCTGGCACAAACGAGGTGGACAGCAAAACATTTTGCAGAGCTATTCTTGCCAAGACCGTGGTGTGCATTCCTCTGTTGGACGGTGTCGTAGAATTGGGCACAACAGATAAGGTTCAAGAAGACCTTAATTTTATCCAACATGTGAAGAGCTTCTTCGTAGACCACCACCCTCCACCGCCAAAGCCCGCTCTCTCCGAGCACTCCACCTCCAACCCTACCTCCTCATCCGCTGCCGTGTACGCTGTGGCGGACCCACCAGCCGCCAGCCCTGCTTCCAATTACGACATGGACGAAGATGATGAGGAAGCCGACTCTGAGGCAGAAACAGCCCGACCAGACGCATCAGGCGTGGCAGCTGCCGAACCAAGCGAGCTAATGCAGCTGAAGATGTCGGAGGATATCCGGGTGGGTTCGCCAGATGATAGCTCCAACAACCTTGACGCTGACCTCCATTTGCTAGCGGTGAGCCAGACGGGGGATCAAGAACGCCGAGCTGAATCTTACCGAGCCGAGTCGAGCCGAAAGTGGGATGGATCGGGGCTTCAACTACCAGCTACGGGTTCTCCGCTAGAAGACTTGACATACGAAGACGCCCACTACTCTCAAACAGTGTCCACCATCCTCCAAAACCACTCCATCCGGTGCCCCCAATCATCCTCCATCTCCTACATCACTTACCTCTCTGAATCCGCTTTCGCCAACTGGAACAGCCACGCCCACCACCTCCATGTCTCCGTCGACAGCACCTCCACACCCCGAGATGCCTGTGACCCCATCACGCGATTTCGGGGGAAGGACACACCGGAAGACAAGCTCGGCTCTAACCACGCCCTCGCCGAGCGCCGCCGCCGCGAGAAGCTCAACGAGAAGTTCATCATACTGAGGTCGCTCGTCCCCTTCGTCACCAAAATGGACCAGGCGTCCATATTAGGGGACACCATCGAGTACGTGAAACAGTTACGTAAAAAGATCCAGGATCTGGAGGCACGCAACCGCCAGATGGAGGCCAATCAACAATCCAAAGAACAACAAAGGAGAGGGGCAACGGTCTGTTCGGACAAGAGAAAGGTGAGGATCGTGGAGGGGAGTGGTGGGATGACGAAAGCAAAGACGGTGGAGAGGTCAGCGCTGGCGTCGCCGTCAGGAGTGGTGACGCCGGTGCAGGTGTCTATCATAGAGAGCGATGCGCTGTTGGAGCTGGAATGCGCGGATAGGGAAGGGTTGTTGCTGGATGTGATGCAAATGCTGCGAGGGATGCGGATAGAGGTGAGGACGGTGCAGTCTTCGCGGGACAATGGGGTGATAGCGGTGGAGTTGAGGGCGAAGATGAAGGAAAATGCAAACGGAAAGAAGGCCAGCATTGTGGAAGTGAAGAGGGCCCTCGACCAAATCATACCCCACACCGATTGA 1767 0.5546 MGAPLSSRLQAAVQSVQWTYSLYWQPCPQQGVLVWGDGYYNGAIKTRKTVQSMEVSAEEAYLQRSQQLRELYGSLSARETNPPTRRPCDALSPEDLSESEWFYLMLPGKAYARRQHVWLAGTNEVDSKTFCRAILAKTVVCIPLLDGVVELGTTDKVQEDLNFIQHVKSFFVDHHPPPPKPALSEHSTSNPTSSSAAVYAVADPPAASPASNYDMDEDDEEADSEAETARPDASGVAAAEPSELMQLKMSEDIRVGSPDDSSNNLDADLHLLAVSQTGDQERRAESYRAESSRKWDGSGLQLPATGSPLEDLTYEDAHYSQTVSTILQNHSIRCPQSSSISYITYLSESAFANWNSHAHHLHVSVDSTSTPRDACDPITRFRGKDTPEDKLGSNHALAERRRREKLNEKFIILRSLVPFVTKMDQASILGDTIEYVKQLRKKIQDLEARNRQMEANQQSKEQQRRGATVCSDKRKVRIVEGSGGMTKAKTVERSALASPSGVVTPVQVSIIESDALLELECADREGLLLDVMQMLRGMRIEVRTVQSSRDNGVIAVELRAKMKENANGKKASIVEVKRALDQIIPHTD 588
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi11g0622 588 PANTHER TRANSCRIPTION FACTOR TT8 5 585 - -
Glsi11g0622 588 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 393 460 IPR036638 GO:0046983
Glsi11g0622 588 SMART finulus 396 445 IPR011598 GO:0046983
Glsi11g0622 588 Gene3D - 385 457 IPR036638 GO:0046983
Glsi11g0622 588 MobiDBLite consensus disorder prediction 174 239 - -
Glsi11g0622 588 Pfam Helix-loop-helix DNA-binding domain 394 440 IPR011598 GO:0046983
Glsi11g0622 588 MobiDBLite consensus disorder prediction 274 302 - -
Glsi11g0622 588 Coils Coil 429 463 - -
Glsi11g0622 588 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 5 171 IPR025610 -
Glsi11g0622 588 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 390 439 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi11g0622 Glsi-ChrGlsi11 3906688 3910814 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi11g0622 5 188 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G09820 67.000 3.66e-85 273
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Glsi11g0622 bHLH-MYC_N 7.2e-38 CL0161
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi11g0622 11 3906688 3910814 Glsi11g0622 11 3906688 3910814 ECH