Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi11g0611 ATGACCTTCTCGGTGGCAATGACACAATCACTAATGAATGTTACTTCCAGCGTTGGTAAAAAAAGGAATGTGATCAGTGTTCCAGGACAGAAAGAGAAGGTAGTTGTGGTCATGGGAGCCACTGGCACCGGAAAGTCTAGGCTATCCATCGATCTAGCCACCCTTTTTTCTGCAGAAATAATCAACTCTGACAAAATGCAAGTGTACGACGGGCTTGACGTAGTCACAAACAAGATCACCAAGGCAGAGCAGCGAGGGGTGACTCATCATTTGCTAGCAACACAGAACCCCTACTCAGAGTTCACAGCCACTAACTTCTGTGACGTGGCATCACTTGCCATCGAGTCAATTAGGGGTCGTGCTCATCTTCCTATCATCGTTGGAGGGTCCAACTCCTATATTGAGGCCCTAATTGACGACGACTTTAATGACTACAAACTCCGATCAAGGTATGATTTCTGTTGTCTTTGGGTAGACGTGTCAATTCCTGTTCTTCATCCATATGTAGAGAAACGGGTTGATCAAATGTTAGACAACGGAATGGTAAATGAACTGCGACCGTTTTTTAATCCCTACGGAGATTATTCACGAGGGATTAGAAAAGCTATTGGGGTTCCCGAGTTCCATCCATATTTTCGACGCGAGGCCTTGGAAGATGAAGAAAACAGGAAGAGGTTGCTGGAACAAGTTATCGGTGAAATGAAGGAGAATACGTGTAAATTGGCATGCAAACAGTTGGATAAGATTCGTAGGCTCTGCAATGTCAAGAGATGGAAAATTCACCGCCTAGATGCCACGCCTGTGTTTCGAAATCATGGGGAAGAAGCAGATAAGGCATGGAAGAAGCTGGTGGCGGAACCAGGTGCCAGGATCGTGGCTCAGTTTCTTTATGATTTCACCCCACCGAATGTTCCTGTTACAGCTAGGCTTAGCTTTTCAGCCCGGGAGAGAGCGACATAACAGTATCAAGATACCCATGTTGTCATCAATTTTGAGAGACCTCATGGGCTTGATGCAAACAAACAACTTGCTGCAGCAAATGGTGTCCCCCACTTGCCTCGTTATATTGAAGATGGCCTGGGAACTTATGGACGACAAATGTTGTCGTGCAGGACTCAGGATGGTAGAACACAGCGTGAAGATGCAGCTCATGATTTTTCGCCATTATATGAGCTGCCCGTGTTTCATCATTTTGCGCCGAACAGCCCTCCTGCAACTCCTCCACAGGATAAGGGTCCTGGAGCTCTGACACATACAAAAGTTAAAAGTGAGGAGCAGGGAAGTCAGTGGAGGCACCAGCTGATTAAAAGCGCAGTTGAGGAACAAGATGCAGGGCCTTCTCCTCCATGTTCTGTATCTGTAGAAAATGTCAAAAGCGCTACTCCCGATGGTAATGGTAATGGTAATAGAAGTGCAAACCTTGCAGATACAGGGCGGAAAGATTTTAATTGTCCTGCAGTTGGTGATTATGATGCCAGTACTTGTGGTAAAAGCCATAAATTAGGAAAATATGAAACTGCCATAATTCAGAGAGCGGTTGTTCTGTTTCTAAACAAGATTGCTCTGAGTGTAATCGATGATGAAGATGAGGTTAGTGAGAATAATGTTGCTAACCAGTCTAATCAAGGATTCAGGATTGATCTGCTCGAAGAAATCATTGATGAAGCCAAAACTATTACGGTAGTATTAGCTTCAGACGCTCAGAATTGGATTGTGGAAAAATCGTTTTCAGAAATGGAATCACTTATCAACTTAATGAGAGAAGTAGAAGTTGAGGAGAAATCTGCAGAACAAGCCAAACTGGGAGCGGCTCAAAGGGGAATTGATGTCCTGGTCAGGATGGAAGAGTTGAAAAGATGAGAAGTTTATGGAGAAAAGGCAATTTTAGCCACTGAAATGAGGGAACTTTCGATCTCGTCTGCTCAGCTAGTCAGATGA 1938 0.4448 MTFSVAMTQSLMNVTSSVGKKRNVISVPGQKEKVVVVMGATGTGKSRLSIDLATLFSAEIINSDKMQVYDGLDVVTNKITKAEQRGVTHHLLATQNPYSEFTATNFCDVASLAIESIRGRAHLPIIVGGSNSYIEALIDDDFNDYKLRSRYDFCCLWVDVSIPVLHPYVEKRVDQMLDNGMVNELRPFFNPYGDYSRGIRKAIGVPEFHPYFRREALEDEENRKRLLEQVIGEMKENTCKLACKQLDKIRRLCNVKRWKIHRLDATPVFRNHGEEADKAWKKLVAEPGARIVAQFLYDFTPPNVPVTARLSFSARERATXQYQDTHVVINFERPHGLDANKQLAAANGVPHLPRYIEDGLGTYGRQMLSCRTQDGRTQREDAAHDFSPLYELPVFHHFAPNSPPATPPQDKGPGALTHTKVKSEEQGSQWRHQLIKSAVEEQDAGPSPPCSVSVENVKSATPDGNGNGNRSANLADTGRKDFNCPAVGDYDASTCGKSHKLGKYETAIIQRAVVLFLNKIALSVIDDEDEVSENNVANQSNQGFRIDLLEEIIDEAKTITVVLASDAQNWIVEKSFSEMESLINLMREVEVEEKSAEQAKLGAAQRGIDVLVRMEELKRXEVYGEKAILATEMRELSISSAQLVR 645
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi11g0611 645 Gene3D Crystal structure of tRNA isopentenylpyrophosphate transferase (bh2366) domain 162 260 - -
Glsi11g0611 645 Gene3D - 31 296 IPR027417 -
Glsi11g0611 645 MobiDBLite consensus disorder prediction 452 476 - -
Glsi11g0611 645 FunFam Adenylate isopentenyltransferase 5, chloroplastic 162 260 - -
Glsi11g0611 645 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 35 145 IPR027417 -
Glsi11g0611 645 PANTHER TRNA DIMETHYLALLYLTRANSFERASE 31 296 IPR039657 -
Glsi11g0611 645 Pfam IPP transferase 146 250 - -
Glsi11g0611 645 Pfam IPP transferase 67 142 - -
Glsi11g0611 645 Coils Coil 579 599 - -
Glsi11g0611 645 Coils Coil 217 237 - -
Glsi11g0611 645 MobiDBLite consensus disorder prediction 395 476 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi11g0611 Glsi-ChrGlsi11 3855745 3861580 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi11g0611 149 296 C2H2 Transcription Factor Family AT2G27760 32.000 8.82e-20 90.9
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi02g3220 02 80445625 80446632 Glsi11g0611 11 3855745 3861580 CCT
Glsi11g0611 11 3855745 3861580 Glsi11g0611 11 3855745 3861580 ECH