Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi11g0597 ATGATTCCTTGGGGTGGAGTCAGTTGCTGTTTGAGTGCAGCTGCTCTTTACCTTCTCGGGAGAAGTAGTGGCAGGGATGCTGAAATTCTTAAATCCGTTACTCGGGTCAATCGGTTAAAGGATCTAGCACAACTGTTAGATGCTGAAATATTACCTTTGGTTGTTGCAATTTCCGGAAGAGTTGCCTCTGAAACACCAATTAACTGCGAGTTCAGTGGTTTAAGGGGTGTAATAGTTGAAGAAACGGCAGAGCAGCATTTTCTTAAACACAACGATGCTGGTTCCTGGATACAAGATTCTGCTTTGATGTTATCCATGAGTAAAGAAGTTCCTTGGTATCTGGATGATGGAACTAGTCGTGTTCAAGTGGTTGGAGCTCGGGGTGCCACGGGTTTTTTATTACCTGTTGGAAGTGAAGCATTTGAAGAATCAGGTCGATCACTTGTTCGTGGAACATTAGATTATCTCCAAGGTCTCAAGATGCTTGGTGTCAAGAGAATTGAACGGGTACTTCCAATTGGCACATCCTTGACAGTTGTTGGTGAGGCTGCTAAAGATGACATTGGAACCATCCGAGTTCAGCGACCCCACAAAGGGCCATTTTATGTTTCTCCCAAAACAATTGACCAGCTCATCGCAAATCTTGGGAAATGGGCAAGGTGGTATAAGTATGCTTCTGTGGGCTTGACACTATTTGGCGCTTATCTAATAACTAAGCATGCTATTGAATACATCTTGGAAAGACAGCGCCGTGGTGAACTGCAAAGAAGGGTTCTTGCTGCAGCCGCTAAGAGGTCAGGACAAGATAATGAAGGTGAAAAGACTGAGAGCTTATCAGATGGTGCAAAAAGAGATCGCCTAATGCCAGATTTGTGTGTAATATGCCTTGAGCAGGAGTATAATTCTGTTTTTGTTCCGTGTGGGCATATGTGCTGCTGTACAATTTGCTCTTCACATTTAACCAACTGTCCTCTTTGCCGGCGGCGGATAGAGCTGGTAGTGAAGACTTTTCGTCATTGA 1020 0.4422 MIPWGGVSCCLSAAALYLLGRSSGRDAEILKSVTRVNRLKDLAQLLDAEILPLVVAISGRVASETPINCEFSGLRGVIVEETAEQHFLKHNDAGSWIQDSALMLSMSKEVPWYLDDGTSRVQVVGARGATGFLLPVGSEAFEESGRSLVRGTLDYLQGLKMLGVKRIERVLPIGTSLTVVGEAAKDDIGTIRVQRPHKGPFYVSPKTIDQLIANLGKWARWYKYASVGLTLFGAYLITKHAIEYILERQRRGELQRRVLAAAAKRSGQDNEGEKTESLSDGAKRDRLMPDLCVICLEQEYNSVFVPCGHMCCCTICSSHLTNCPLCRRRIELVVKTFRH 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi11g0597 339 PANTHER - 1 306 IPR044231 GO:0004842|GO:0016567
Glsi11g0597 339 Pfam E3 Ubiquitin ligase 85 233 IPR022170 GO:0004842|GO:0006996|GO:0016567
Glsi11g0597 339 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 262 338 IPR013083 -
Glsi11g0597 339 CDD RING-HC_LRSAM1 292 335 - -
Glsi11g0597 339 FunFam E3 ubiquitin-protein ligase SP1 280 338 - -
Glsi11g0597 339 ProSiteProfiles Zinc finger RING-type profile. 292 327 IPR001841 -
Glsi11g0597 339 Pfam Zinc finger, C3HC4 type (RING finger) 290 332 - -
Glsi11g0597 339 SUPERFAMILY RING/U-box 291 333 - -
Glsi11g0597 339 FunFam Baculoviral IAP repeat containing 7 301 337 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi11g0597 1 272 C3H Transcription Factor Family AT1G63900 77.007 1.25e-155 436
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi11g0597 11 3792829 3797576 Glsi11g0597 11 3792829 3797576 ECH