Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi11g0583 ATGAAGGAGAAGGCTGATTCCCCTGTTGGAGTTCTTGAGGACTATTTTAGGAGTTCAGAGTCAGAAACAAGTTCTTCCAAAGAACCCACAGTGGGTTCTGAGTCTAAAGATAACTCTAAACCTGCTTCTAGATGGCGTGGATTTCTTCAATCGTTGAGGAGCAGATCAAAGAAACCTATTGCCACATTGCATCCTCTCAGTGTCCTCAAGCTCTCCAAGAGAATGAGCAGTAGCATGAGGGAGACTATACTGCCAGATTGTCGCATAGATGCTGATTCATCCCTCTATGGGTCACCGTGGAAGATCTTTACTCAGGACGAAATTCAAAGGGCAACCAATCATTTCAGCCAGAAAAATTTAATAGGAAAGGGTGGTTATGCTGAAGTTTACAAGGGGTGTCTGCCAAATGGTCAGCTGGTAGCAATTAAACGGCTAACACGAGGAACACCAGATGAGATCATAGGGGATTTCTTATCAGAACTAGGTATAATGGCGCATGTGAGCCATCCCAATACTGCTAAGTTGGTTGGCTATGGGGTGGATGGAGGAATGCATCTAGTTCTTTTATTGTCTGAAAAAGGGAGCTTGGCTTCAGCGCTTTATGGTTCCAAGGAGAAACTACCATGGTGTACTAGGCACAAAATTGCATTAGGAACAGCTAAGGGTATACTATATCTTCATGAGGGCTGTCATAGAAGAATTATCCACAGAGATATAAAGGCTGCAAATATCTTGCTCACAGAAGACTTTGAGCCTCAGATTTGTGATTTTGGGCTAGCAAAATGGCTGCCAGAGAATTGGACTCACCACACGGTTTCAAAATTTGAAGGGACATTTGGATACCTTGCTCCTGAATACTTACTTCATGGCATAGTGGACGAGAAAACAGACGTATTTGCCTTTGGTGTAGTGCTATTAGAATTAGTGACTGGGCGGCGAGCACTTGATTATTCCCAGCAGAGCCTAGTTTTATGGGCAAAACCATTGCTGAAAAAGAATGATACAAGGGAGTTGGTTGATCCTTCGATAGCCGACGATTTTGACTCAAGGCAGATTAATATTGTGCTCTTGGCTGCATCTTTATGCATACAACAATCCTCAATTGGTCGGCCCTCTATGAGACAGGTTGTACAGCTTCTGAATGGCAACCTTAGCTGCTTTAAGTGCATGAAGAAGACTCGACTGCCATTGTTCCGAAAAGTCTTCCAGGAAGAGGTCCTTCATTCTGAATAG 1233 0.4355 MKEKADSPVGVLEDYFRSSESETSSSKEPTVGSESKDNSKPASRWRGFLQSLRSRSKKPIATLHPLSVLKLSKRMSSSMRETILPDCRIDADSSLYGSPWKIFTQDEIQRATNHFSQKNLIGKGGYAEVYKGCLPNGQLVAIKRLTRGTPDEIIGDFLSELGIMAHVSHPNTAKLVGYGVDGGMHLVLLLSEKGSLASALYGSKEKLPWCTRHKIALGTAKGILYLHEGCHRRIIHRDIKAANILLTEDFEPQICDFGLAKWLPENWTHHTVSKFEGTFGYLAPEYLLHGIVDEKTDVFAFGVVLLELVTGRRALDYSQQSLVLWAKPLLKKNDTRELVDPSIADDFDSRQINIVLLAASLCIQQSSIGRPSMRQVVQLLNGNLSCFKCMKKTRLPLFRKVFQEEVLHSE 410
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi11g0583 410 ProSitePatterns Protein kinases ATP-binding region signature. 121 143 IPR017441 GO:0005524
Glsi11g0583 410 SUPERFAMILY Protein kinase-like (PK-like) 95 380 IPR011009 -
Glsi11g0583 410 ProSitePatterns Serine/Threonine protein kinases active-site signature. 234 246 IPR008271 GO:0004672|GO:0006468
Glsi11g0583 410 Pfam Protein kinase domain 116 321 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi11g0583 410 FunFam receptor-like cytosolic serine/threonine-protein kinase RBK2 192 394 - -
Glsi11g0583 410 Gene3D Phosphorylase Kinase; domain 1 87 189 - -
Glsi11g0583 410 SMART serkin_6 115 387 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi11g0583 410 MobiDBLite consensus disorder prediction 1 44 - -
Glsi11g0583 410 ProSiteProfiles Protein kinase domain profile. 115 384 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi11g0583 410 Gene3D Transferase(Phosphotransferase) domain 1 192 393 - -
Glsi11g0583 410 PANTHER OS08G0249100 PROTEIN 4 394 IPR046958 -
Glsi11g0583 410 MobiDBLite consensus disorder prediction 17 38 - -
Glsi11g0583 410 FunFam Receptor-like cytosolic serine/threonine-protein kinase RBK2 86 189 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi11g0583 Glsi-ChrGlsi11 3700257 3702205 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi11g0583 97 376 Trihelix Transcription Factor Family AT1G68690 42.612 4.29e-68 226
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Glsi11g0583 Pkinase 4.4e-39 CL0016