Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi11g0567 ATGGCGGACGGGGAGGAGGAGAGAAAATCCAGTGAGGAGAGTGTGAAACTGTTTGTGGGTCAAGTGCCGAAGCATATGACGGAAGCTGATCTCCTTGCAATGTTCAAGGAGTTTGCTTTGGTCGAAAAGGTCAACGTCATCAAGGATAAAGCTACTCGCGCCTCCCGAGGGTGTTGCTTTGTAATTTGTCCGTCGAGAGAAGAGGCAGACAAGGCCGTCAATGCTTGTCATAATAAAAAAATGCTACCTTTGGTTGGTACCATCTCCATTTCTTATTATGGGTTGGGTTTCCTTTTCTTTTACCTCCTCGAGTTAGCATTGTGTTTTGTGATGTTGAAAGTGAACCGTTTTGATGGAATGGGTTCTAGTGTTCCTTTGGTTGTTAAATGGGCAGATACTGAAAAGGAAAGGCTTGCTCGAAGGGCTCAGAAAGCACAGTCCCAAGCTTCTTGTGTGCCTTTTACTGATGTACATCCTTCATTGTTTGAAGCCTTGCCAATGGGTTATGTTCCTCCATATAATGGATATGGTTATCAGGCTCCAGGGGTTTATGGGCTTGTGCCATATCGGTTGCCACCAATGCAGAATCAGCCCGGTTTCCATAGTGTGATGCCCCATACTAACCAAGGAAATGCATTGCGGCCCGAACTTGGCTCCAATTTGAACCCTAGAAATTATCCTGTACCTCATGCAAGTTATGTTGGCTCATATACTGCAGTGCCAGGTGTACAGAATCCAATGGCATATCCTGGAGGAATGATAAGTCCAAGCCTTTTGAATAGTTCTTCTGGTTCTGTTTCACCTACAGCTGGAAACAGCTACTCTGCTACATCTTCAGGCACCAGTAAAACTTCGTGGAGTCAGGTCGAAGGACCGCCTGGTGCCAATCTCTTTATTTGTCACATACCTCAAGAATTTGGAGATGAAGAGCTGGCAACTGCCTTTGAACCATATGGTAGACTTGTGAGTGCTAAAGTTTTTGTTGATAAAGCAACCGGTGAAAGCAAATGTTTTGGGTTTGTTAGTTATGATTCGGCAGAATCTGCTCAAGCTGCTATTAGTAAGATGAATGGATGCCAATTAGGTGGTAAGAATCTAAAGGTTCAGCTGAAGAGGGACAAACAGAGGAAGCCTTTCTGA 1140 0.4465 MADGEEERKSSEESVKLFVGQVPKHMTEADLLAMFKEFALVEKVNVIKDKATRASRGCCFVICPSREEADKAVNACHNKKMLPLVGTISISYYGLGFLFFYLLELALCFVMLKVNRFDGMGSSVPLVVKWADTEKERLARRAQKAQSQASCVPFTDVHPSLFEALPMGYVPPYNGYGYQAPGVYGLVPYRLPPMQNQPGFHSVMPHTNQGNALRPELGSNLNPRNYPVPHASYVGSYTAVPGVQNPMAYPGGMISPSLLNSSSGSVSPTAGNSYSATSSGTSKTSWSQVEGPPGANLFICHIPQEFGDEELATAFEPYGRLVSAKVFVDKATGESKCFGFVSYDSAESAQAAISKMNGCQLGGKNLKVQLKRDKQRKPF 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi11g0567 379 Gene3D - 2 141 IPR012677 -
Glsi11g0567 379 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 15 95 IPR000504 GO:0003723
Glsi11g0567 379 SUPERFAMILY RNA-binding domain, RBD 13 375 IPR035979 GO:0003676
Glsi11g0567 379 CDD RRM3_CELF1-6 297 369 - -
Glsi11g0567 379 Gene3D - 272 378 IPR012677 -
Glsi11g0567 379 MobiDBLite consensus disorder prediction 260 289 - -
Glsi11g0567 379 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 17 80 IPR000504 GO:0003723
Glsi11g0567 379 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 297 367 IPR000504 GO:0003723
Glsi11g0567 379 FunFam RNA-binding protein BRN1 262 372 - -
Glsi11g0567 379 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 295 373 IPR000504 GO:0003723
Glsi11g0567 379 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED 288 374 - -
Glsi11g0567 379 SMART rrm1_1 296 369 IPR000504 GO:0003723
Glsi11g0567 379 SMART rrm1_1 16 91 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi11g0567 Glsi-ChrGlsi11 3625043 3629018 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi11g0567 292 377 Eukaryotic Initiation Factors Gene Family AT1G22760 37.209 2.96e-12 66.2
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi02g3274 02 80762432 80766414 Glsi11g0567 11 3625043 3629018 CCT
Glsi11g0567 11 3625043 3629018 Glsi11g0567 11 3625043 3629018 ECH