Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi11g0562 ATGATGTCGTTTAGGAGTATTATCCAGGATATAAAGGGTGAGTTTGGGAGTATTTCAAGGAAAGGATTTGAGGTGAAGTTGGGGTATGGGATGAGATCGAGATCACAGTCATACCGAGATGCTGAGGATGGTTTGGTGGTAATTGATGGTTTGAAGCAGAGTTGTTGGGCTAATATGCCACCGGAGCTTTTGAGGGATGTGCTAATGAGGATAGAGGCCTCTGAAGATACCTGGCCTGCACGAAAACATGTGGTTGCCTGTGCTGGTGTATGCCGCAGTTGGAGAGAAATCATGAAAGAAATTGTGAAATCTCCTGAAGTATCGGGCAAGTTGACACTCCCAGTCTCCTTGAAGCAGCCTGGCCCAAGGGACTCTCTTCTTCAGTGCTATATTAAACGGAATCGCAGTAATCAAACATATTATCTGTTCCTTGGTTTAAACCAAGCTTCAACTGATGATGGCAAGTTCCTTCTTGCTGCACGCAAGTGTCGACGTCCTACCCACACAGACTATATCATTTCACTGAACCCCGATGATGTATCAAGAGGGAGTAGCACCTATATTGGAAAGTTGAGATCAAACTTTCTAGGCACCAAATTTACTGTTTATGATGCACACCCTCCAATTTGTGGAGCCAAAGTCACTAAGTCTCGTTCTACCAGGCTAGTTAGTCTGAAGCAAGTGTCTCCAAGAGTTCCTGCTGGAAACTATCCCATTGCGCATGTCTCATATGACCTGAATGTTCTAGGTTCCAGGGGCCCAAGAATAATGCATTGTATTATGGATTCCATCCCTGCTTCAGCTGTTGAACCAGGAGATCAAAATCAACCCGCATGGAAAATTTCCAATCAGTCCCTTTGTCTTGCCAAAACAAGGAAATGCTTGTATTACGGAACAAGTCCCCCAGGTGGCATGAACAACTCCAATGCTGGTGTCTAA 939 0.4483 MMSFRSIIQDIKGEFGSISRKGFEVKLGYGMRSRSQSYRDAEDGLVVIDGLKQSCWANMPPELLRDVLMRIEASEDTWPARKHVVACAGVCRSWREIMKEIVKSPEVSGKLTLPVSLKQPGPRDSLLQCYIKRNRSNQTYYLFLGLNQASTDDGKFLLAARKCRRPTHTDYIISLNPDDVSRGSSTYIGKLRSNFLGTKFTVYDAHPPICGAKVTKSRSTRLVSLKQVSPRVPAGNYPIAHVSYDLNVLGSRGPRIMHCIMDSIPASAVEPGDQNQPAWKISNQSLCLAKTRKCLYYGTSPPGGMNNSNAGV 312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi11g0562 312 CDD F-box_AtTLP-like 56 100 - -
Glsi11g0562 312 Pfam Tub family 117 276 IPR000007 -
Glsi11g0562 312 SUPERFAMILY Tubby C-terminal domain-like 105 288 IPR025659 -
Glsi11g0562 312 Pfam F-box domain 56 102 IPR001810 GO:0005515
Glsi11g0562 312 Gene3D Tubby Protein; Chain A 115 297 IPR025659 -
Glsi11g0562 312 PRINTS Tubby superfamily signature 187 211 IPR000007 -
Glsi11g0562 312 PRINTS Tubby superfamily signature 171 187 IPR000007 -
Glsi11g0562 312 PRINTS Tubby superfamily signature 236 263 IPR000007 -
Glsi11g0562 312 SUPERFAMILY F-box domain 51 99 IPR036047 GO:0005515
Glsi11g0562 312 PANTHER TUBBY-RELATED 42 271 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi11g0562 Glsi-ChrGlsi11 3602711 3605648 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi11g0562 2 272 TUB Transcription Factor Family AT2G47900 76.190 3.57e-153 433
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Glsi11g0562 Tub 4.4e-55 CL0395