Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi11g0548 ATGAAGCTGTACGGTCGAAATCAGGCGAGGAATGGATGGCAACCGGGTTATCAATCTGAGTGGCGCCCGGCAGCCGGCGACACTGGCCTCGAAGAATCGATGTGGCACTTGGCACTCAGTAGCAGCGAATCATACCCGGAGCGACCTGGCGTGCCCAATTGTGTGTATTACATGCGAACCGGGTTCTGCGGATATGGTAGCAGGTGTCGTCACAATCATCCCCGTGATCGCGCTGCGGTTGCAGCTGCAGTAAGAGCTACAGGGGAGTACCCTGAAAGGGCGGGGGAACCTCCATGTCAGTATTATTTAAAAACTGGAACCTGTAAATTTGGTGCATCCTGTAAATTCCACCATCCGAGACAAGGAAGTGGATTGTTAAGCCAAGCTCCACTAAATATTTTTGGATACCCATTACGGCTGGGTGAGAAAGAATGCTCCTACTATTTGAAAACGGGGCATTGTAAATTTGGTATAACTTGTAAATTCCATCATCCTCAACCAGCTGGCACATCAATGTCAGTATCTGCACCTCAATTTTTTCAACAGGTGCAGTCTCCTACAATTCCTCTACCTGAACAGTATGGGGGGTTATCCACCAGCTTAAGAGTGGCTAGGCCTCCAATGTTGCCTGGTTCATATGTGCAAGGGGCCTATGGTCCTTTACTTCTTTCCCCAGGGGTTGTTCCCTTTCCTGGATGGAGTCCTTATTCGGCCCCTGTAAGTCCTGTGATGTCTCCTAGTGCTCAACCTGCTGTTCGTGGTACTTCTCTGTATGGAGTGACCCAGATGTCTTCATCAACATCAGCTTTTGCAAGACCATATACTCCTCTGCTCTCTTCTACTAGCCCTTTAGGCAGCAGCCAGAAGGAACAACTATTTCCTGAAAGGCCTGGTGAACCTGATTGCCAATATTATCTGAGAACAGGGAACTGTAAATATGGATTAGCTTGTCGCTATCATCATCCTAGGGATCAGGCTATGACACAGCCGCTTCCCAGCCCTATTGGTCTTCCTCTACGCCCGTTGTAG 1029 0.4908 MKLYGRNQARNGWQPGYQSEWRPAAGDTGLEESMWHLALSSSESYPERPGVPNCVYYMRTGFCGYGSRCRHNHPRDRAAVAAAVRATGEYPERAGEPPCQYYLKTGTCKFGASCKFHHPRQGSGLLSQAPLNIFGYPLRLGEKECSYYLKTGHCKFGITCKFHHPQPAGTSMSVSAPQFFQQVQSPTIPLPEQYGGLSTSLRVARPPMLPGSYVQGAYGPLLLSPGVVPFPGWSPYSAPVSPVMSPSAQPAVRGTSLYGVTQMSSSTSAFARPYTPLLSSTSPLGSSQKEQLFPERPGEPDCQYYLRTGNCKYGLACRYHHPRDQAMTQPLPSPIGLPLRPL 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi11g0548 342 Gene3D - 125 175 - -
Glsi11g0548 342 ProSiteProfiles Zinc finger C3H1-type profile. 93 121 IPR000571 GO:0046872
Glsi11g0548 342 SMART c3hfinal6 48 75 IPR000571 GO:0046872
Glsi11g0548 342 SMART c3hfinal6 139 166 IPR000571 GO:0046872
Glsi11g0548 342 SMART c3hfinal6 93 120 IPR000571 GO:0046872
Glsi11g0548 342 SMART c3hfinal6 296 323 IPR000571 GO:0046872
Glsi11g0548 342 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 298 323 IPR000571 GO:0046872
Glsi11g0548 342 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 96 120 IPR000571 GO:0046872
Glsi11g0548 342 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 142 166 IPR000571 GO:0046872
Glsi11g0548 342 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 50 75 IPR000571 GO:0046872
Glsi11g0548 342 SUPERFAMILY CCCH zinc finger 301 325 IPR036855 GO:0046872
Glsi11g0548 342 ProSiteProfiles Zinc finger C3H1-type profile. 139 167 IPR000571 GO:0046872
Glsi11g0548 342 ProSiteProfiles Zinc finger C3H1-type profile. 48 76 IPR000571 GO:0046872
Glsi11g0548 342 SUPERFAMILY CCCH zinc finger 97 121 IPR036855 GO:0046872
Glsi11g0548 342 Gene3D - 44 124 - -
Glsi11g0548 342 Gene3D - 289 333 - -
Glsi11g0548 342 ProSiteProfiles Zinc finger C3H1-type profile. 296 324 IPR000571 GO:0046872
Glsi11g0548 342 SUPERFAMILY CCCH zinc finger 52 77 IPR036855 GO:0046872
Glsi11g0548 342 PANTHER PROTEIN PHOSPHATASE RELATED 38 341 - -
Glsi11g0548 342 SUPERFAMILY CCCH zinc finger 140 167 IPR036855 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi11g0548 Glsi-ChrGlsi11 3552777 3555010 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi11g0548 20 341 C2H2 Transcription Factor Family AT5G18550 50.882 1.00e-108 323
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Glsi11g0548 zf-CCCH 3.7e-09 CL0537