Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi11g0540 ATGACGGAGGTCTTGAAAGACGATTTTTCGGAGCTAGAGATTGGGAATTCCGTGGAGTCGTTCCAAAAGTTTTTGGGTTCACAAAGGGAGCTCTTCCATGGCCAGATCGATCAGTTTCAGAAAATTGTCGTCACGCAATGCAAACTCACTGGCGTCAATCCTCTCTCTCAAGAAATGGCGGCTGACGCGCTGTCAATAAAAATTGGAAAAAGACCCAGGGATTTATTAAATCCAAAAGCTGTAAATTACATGCAATCAGTTTTCAGCATTAAAGATGCTATTACTAAGAAAGAATCCCGTGAGATCAGTGCTTTATTTGGTGTCACAGTGACGCAGGTTCGCGAGTTTTTCAATAGCCAACGTTCAAGAGTGAGGAGACTAGTTCGGTTGTCAAGGGAGAGGGCATTAAGATCTAACTACTGTGAAGAACGTTGTGATGGGTATCCAATAAACTCTGATCCTATGATACCGATTAATCTGGCTCCCTTAAACACTGCTGGCCCCACCAGTGTTGAAGAAGCATCTTGTTCAACACAGGAGACTGCTTTTTCTGGCCTAAATGACTTAGATAAATATTTCGTTGATAATATTTTTAGTTTAATGCGGAAAGAGGAAACATTTTCTGGGCAGGAGAAATTGATGGAATGGATCTTGAAGATACAGAACTTTTCAGTATTATGTTGGTTTTTAACCAGCGGAGGTGTGATGATTTTAACGACTTGGTTGAGTGAAGCAGCTGTTGAGGAGCAAACAAGTGTTCTTATCCTTATATTAAAGGTTCTTTGTCATTTGCCTCTACATAAAGCCATTCCCGCACACATTTCAGCTATATTGCAGTATGTTAATAGGTTGCGATTCCACAGGACATCAGACATATCAAACAGGGCAAGGGTTTTGTTATCAAAGTGGAGTAAATTATTGGCAAGGAACCAAGCAATAAAGAAAAGCAATGGTGTTAAACCTTCCAGTGATGCTCAAAAGGAGATGCTTAGTCAGAGGATTGACCAAATTATGGGCACCGAATCATGGCATTCAAATATTGATGTTCCTGAACACATTCTTGCCCTCTCAAATGAAGGTTCAGATAATTTCAGGAAATTGGAAGCTCCAGAAGCTGTGAAACTGTTGCCAGCCTCTTCAGATGATTCTATGAAGAAGTCTTTCCTAGGTGTTTCTTCATCTCAAACTAGGGAGCGCAGAAAAGTGCAGTTAGTGGAGCAGCCAGGCCAAAAAACAGTGAGCAGAAGCCCCCAGGGTGCAAGAGTAGGGCCTATAAGTCAAGGCCGTCCCATGTCTGCTGATGACATCCAGAAAGCAAAAATGCGTGCTCTATTTATGCAGAGCAAGTATGGGAAACCCAGTTCATCAAAAGGAAGCAAAGAAGAAAAGACCGATGGTCTGAATAAACCTCAGACAAATCAGGCTGGAGTTGCGGCTTCTGTAACTAAAATTCCAGTTTCACCCAAAACAGAGGAAGACAAGAAGCCTCCACCGCTTCCCTCTAGAATCTCTAATAGGAAGGAAGCTTCTTCTGATTCAAAATCGTTAATGGATTTGAAGGAACCTCTCTGGGAGAAGTGCAAGATGGTGCAAATCCCATGGAAGACACCAGCAGAAGTGAAACTTAACGATACCTGGAGAGTCGGCGCTGGTGAAAATAGCAAAGAGGTTGACTTCCAGAAAAACAGAAACCGCCGGGAGAAGGAGATTATTTATCAGACTTTCCAGGAGATACCATTTAATCCCAAAGAGCCATGGGACCTCGAGATGGACTATGATGACACTTTGACCCCTGCAATTCCTATTGAACAGCTGCCTGATGGTGATGGTGCTGAAACACCAGTTTCCCCCAACCATGGTGTACAAGTGGCGACCGCCTCATCTTCAAATGGTAATGAAAATATTGCTGAACCGGATTTAGAGCTGCTTGCCGTACTGCTAAAAAATCCAGAGTTGGTATTTGCCTTGACTTCTGGACAAGCTGGTAGCATGCCAAGTGAGGACACAGTGAAGCTGCTTGACATGATCAAAAAAGGTGGTCTCCATTTGGCTGAGAATATAAATGGCATGGCTGGAAAAGCGCAGGACAAGGTGGAAGTTTCTCTCCCGTCTCCAACTCCCTCTAGCGAAACAAGAACGGTGCGTGATTTGAGTTCATACTGCAACTATTTGTCTAAGGTCTTGTCAATGTTTCCTACTACAGTGCCATGCGCACTAAACTTAAGTCTTGTCAGCTTGTACATATTGTGA 2250 0.4311 MTEVLKDDFSELEIGNSVESFQKFLGSQRELFHGQIDQFQKIVVTQCKLTGVNPLSQEMAADALSIKIGKRPRDLLNPKAVNYMQSVFSIKDAITKKESREISALFGVTVTQVREFFNSQRSRVRRLVRLSRERALRSNYCEERCDGYPINSDPMIPINLAPLNTAGPTSVEEASCSTQETAFSGLNDLDKYFVDNIFSLMRKEETFSGQEKLMEWILKIQNFSVLCWFLTSGGVMILTTWLSEAAVEEQTSVLILILKVLCHLPLHKAIPAHISAILQYVNRLRFHRTSDISNRARVLLSKWSKLLARNQAIKKSNGVKPSSDAQKEMLSQRIDQIMGTESWHSNIDVPEHILALSNEGSDNFRKLEAPEAVKLLPASSDDSMKKSFLGVSSSQTRERRKVQLVEQPGQKTVSRSPQGARVGPISQGRPMSADDIQKAKMRALFMQSKYGKPSSSKGSKEEKTDGLNKPQTNQAGVAASVTKIPVSPKTEEDKKPPPLPSRISNRKEASSDSKSLMDLKEPLWEKCKMVQIPWKTPAEVKLNDTWRVGAGENSKEVDFQKNRNRREKEIIYQTFQEIPFNPKEPWDLEMDYDDTLTPAIPIEQLPDGDGAETPVSPNHGVQVATASSSNGNENIAEPDLELLAVLLKNPELVFALTSGQAGSMPSEDTVKLLDMIKKGGLHLAENINGMAGKAQDKVEVSLPSPTPSSETRTVRDLSSYCNYLSKVLSMFPTTVPCALNLSLVSLYIL 749
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi11g0540 749 SUPERFAMILY Homeodomain-like 69 132 IPR009057 -
Glsi11g0540 749 MobiDBLite consensus disorder prediction 487 515 - -
Glsi11g0540 749 MobiDBLite consensus disorder prediction 447 515 - -
Glsi11g0540 749 MobiDBLite consensus disorder prediction 407 421 - -
Glsi11g0540 749 Gene3D Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 231 323 IPR035441 -
Glsi11g0540 749 ProSiteProfiles 'Homeobox' domain profile. 67 127 IPR001356 GO:0003677
Glsi11g0540 749 Gene3D - 69 126 - -
Glsi11g0540 749 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 6-RELATED 107 713 - -
Glsi11g0540 749 MobiDBLite consensus disorder prediction 384 432 - -
Glsi11g0540 749 SUPERFAMILY Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 226 317 IPR035441 -
Glsi11g0540 749 SMART HOX_1 69 131 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi11g0540 Glsi-ChrGlsi11 3501374 3508606 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi11g0540 467 709 Homeobox Transcription Factor Family AT4G02560 45.679 6.57e-45 172