Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi11g0536 ATGAAACTAATTCGTGAATTAGATTCGAATGCTGAAGTTATTGCTCTATCACCCACCACATTAATGGCAACAAATAGATTCATGTGTGAGATCTGCAACAAAGGGTTTCAGAGGGACCAAAACCTTCAGCTGCACCGCAGAGGTCACAATCTTCCATGGAAGCTCAGACACAAACCAAGCAGTGAGATCAACAAGAAGCGGGTCTATGTGTGCCCTGAACCATCATGCGTCCACCATAACCCTGCTCGTGCGCTAGGAGACCTCACTGGCATAAAAAAGCATTACGGCCGGAAACATGGTGAGAAGAAATGGAAATGCGACAGGTGCTTTAAAAAATATGCTGTCCAATCTGATTGGAAAGCTCATCAGAAAACCTGTGGTACCCGGGAATACAAATGTGACTGTGGAACCATATTTTCCAGATACAATACCCCCAACCTCAAGAAAATTTTTATAACCTTCATGTTAAGAATACACAGGACTTCACTTGACCATTTATCTGAATGCTGA 510 0.4294 MKLIRELDSNAEVIALSPTTLMATNRFMCEICNKGFQRDQNLQLHRRGHNLPWKLRHKPSSEINKKRVYVCPEPSCVHHNPARALGDLTGIKKHYGRKHGEKKWKCDRCFKKYAVQSDWKAHQKTCGTREYKCDCGTIFSRYNTPNLKKIFITFMLRIHRTSLDHLSEC 169
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi11g0536 169 ProSiteProfiles Zinc finger C2H2 type domain profile. 27 49 IPR013087 -
Glsi11g0536 169 SUPERFAMILY beta-beta-alpha zinc fingers 26 125 IPR036236 -
Glsi11g0536 169 SMART c2h2final6 69 99 IPR013087 -
Glsi11g0536 169 SMART c2h2final6 27 49 IPR013087 -
Glsi11g0536 169 SMART c2h2final6 104 124 IPR013087 -
Glsi11g0536 169 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 8 143 IPR031140 -
Glsi11g0536 169 Gene3D Classic Zinc Finger 82 153 - -
Glsi11g0536 169 Pfam Zinc-finger double-stranded RNA-binding 27 49 IPR022755 -
Glsi11g0536 169 ProSitePatterns Zinc finger C2H2 type domain signature. 29 49 IPR013087 -
Glsi11g0536 169 Gene3D Classic Zinc Finger 6 73 - -
Glsi11g0536 169 FunFam protein indeterminate-domain 12-like 6 75 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi11g0536 Glsi-ChrGlsi11 3489712 3490221 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi11g0536 5 168 IDZ Gene Family AT2G02070 70.732 2.13e-83 255
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Glsi11g0536 zf-C2H2_jaz 1.5e-05 CL0361
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi02g2817 02 77368073 77369892 Glsi11g0536 11 3489712 3490221 CCT
Glsi11g0536 11 3489712 3490221 Glsi11g0536 11 3489712 3490221 ECH