Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi11g0535 ATGGGTGATAACATGGGCAAAGTTTTAGAGAGAGAAGGCTTTAAGTACAACTTAACAGCTGCAAGTAGCGTCTCTGCTCAAGATGGATTGATTAAGGAGCAAGATCGGTTGCTTCCAATTGCTAACGTAGGGCGGATTATGAAGCAAATTCTACCTCCTAACGCCAAAATCTCCAAGGAAGCTAAGGAAACCATGCAAGAATGTGTGTCCGAGTTCATCAGCTTTGTCACAGGGGAAGCTTCTGATAAGTGTCACAAGGAGAAGCGCAAGACGGTGAATGGCGATGATATTTGCTGGGCTTTGGCTACTTTAGGGTTTGATGACTACGCCGACCCACTCAAAAGGTATTTGCATAAGTATAGGGAATCAGAAGGGGAGAGGGCTAACCAAAATAAGTCTAATAACAGTGATGAAATTGACGAAGCATATGATTATGGAGGTGAGCCACCAAGGAAAACAACCTCTGCTACCCCATTAATCAAGTTCAATGTCACTGATAGAGGCAACGTTGCTGCTATAGATTTGCATCTTATAAGCAAATTTGGCGTTTCTAATACATCCAAAGAGATAACAACGGTGGGAGAGAAATCCAAATACTCTTTTCTGTTTAAGAATTTCTATGAAAAAAAGTGGACATGCACCTCACTTTCTTGAACAAGTATCAAGTTCAGTGTCCCTGTTCAAACTAGGGGAAATGAACAAGACAAAAGCCAAACCCTGCGTGCCCAAAGTCGCTGGACTTGTCGGAATCTTGATGAGTTAGGTGTAGTCCGATATCGAATCCCGTTGGGGTAG 795 0.4277 MGDNMGKVLEREGFKYNLTAASSVSAQDGLIKEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICWALATLGFDDYADPLKRYLHKYRESEGERANQNKSNNSDEIDEAYDYGGEPPRKTTSATPLIKFNVTDRGNVAAIDLHLISKFGVSNTSKEITTVGEKSKYSFLFKNFYEKKWTCTSLSXTSIKFSVPVQTRGNEQDKSQTLRAQSRWTCRNLDELGVVRYRIPLG 264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi11g0535 264 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 25 148 IPR027113 GO:0001228|GO:0006355|GO:0016602
Glsi11g0535 264 MobiDBLite consensus disorder prediction 125 147 - -
Glsi11g0535 264 PRINTS CCAAT-binding transcription factor subunit A signature 103 121 - -
Glsi11g0535 264 PRINTS CCAAT-binding transcription factor subunit A signature 84 102 - -
Glsi11g0535 264 PRINTS CCAAT-binding transcription factor subunit A signature 65 83 - -
Glsi11g0535 264 ProSitePatterns NF-YB/HAP3 subunit signature. 68 84 IPR003956 GO:0005634|GO:0006355|GO:0043565
Glsi11g0535 264 FunFam Nuclear transcription factor Y subunit B-3 26 147 - -
Glsi11g0535 264 MobiDBLite consensus disorder prediction 125 150 - -
Glsi11g0535 264 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 37 101 IPR003958 -
Glsi11g0535 264 SUPERFAMILY Histone-fold 34 149 IPR009072 GO:0046982
Glsi11g0535 264 Gene3D Histone, subunit A 27 149 IPR009072 GO:0046982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi11g0535 Glsi-ChrGlsi11 3466687 3468834 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi11g0535 30 131 CCAAT-HAP3 Transcription Factor Family AT2G47810 83.333 7.41e-61 187
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Glsi11g0535 CBFD_NFYB_HMF 2.8e-27 CL0012
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi11g0535 11 3466687 3468834 Glsi11g0535 11 3466687 3468834 ECH