LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Glsi11g0533	ATGAAGAGGAAAAGCCATAGGAGGAGCAGCAGCAGTGGTAGGAAGGAGAGGAGCAAAATGAAGGGAACACTAGCTAGGCAGTTGCAGGTTCAGCTAGGGCAAGTCTCCCTCTTTCCCCTGCACCACCATCCTCAACCCTCATCTTCCGCTGTCTCTCGCTTCCAGAACCTTCTTGAAGCCGAAGCTCGTGACAGCAATCTTCTGTCTTCTTCGTCTAACGATATGGATCATGTGGTTGATGCCAGTGTGGACGATAAAGATTTCATTCTTAGCCAAGATTTCTTTTGCACTCCAGATTATATAACCCCGGATGATCAGCATATTTTCAACGGCTTGGACTGCAATAAGGAAAACATCCCTTGCCCTAAATCACCGGAGAAGCTAAATACTACAAAAAGCAAGCGATGCCGGCTGGATGGTATCTCAGGGAACCCTCTTAGCCCTACCTTGTCTGGTGGCCACCAACAAACCGTGGAACTTGGAAATGACTCTGTCGCTGATGAAGTAGATGTTGAGAAACTAATGGCAGCTGGTAAACCAAAGGCTCAAAATTATGTCTCACATTCTGTGGTTGCCTTGCGCTGTAGGGTTATACCTCCTCCTTGCATTAGAAACCCATATTTAAAAGATACTTCGGAAAAGGACACAGATCCCTATGGGAACCAAAGATCAAAATTTGCAGGTCTCTTCCCTCCAATTACTGGTGGTGATGGGCTTTCACGCTATCGCACAGATTTTCATGAGATTGAGCAAATTGGTAAAGGGAACTTTAGTAGAGTTTTCAAAGTATTAAAAAGAATTGATGGTTGCTTGTATGCTGTGAAACACATCACAAGACAGTTGGGCCAGGAAACAGAAAGCAGAAAAGCTTTGATGGAAGTTCAAGCTTTGGCAGCATTAGGGTCCCATGAAAACGTAGTGGGATACTACTCTTCATGGTTTGAAAATGAGCAGCTGTACATTCAGATGGAGCTATGTGATCACAGCTTATCCATAACCAAGTGCTCTACTATGTTTACAGAAGGACAAGCGTTAGAAGCATTGTATCAGGTTGCGAATACATTGCGGTTCATACATGAGAGAGGAATAGCTCATCTTGATGTTAAACCTGATAATATTTATGTAAAAAATGGTGTTTATAAGCTTGGTGATTTTGGATGTGCAACTCTTCTTGATAAGAGCCTGCCAATTGAAGAGGGCGATGCACGTTATATGCCCCAGGAAATCTTGAATGAAAATTATGATCATCTTGACAAGGTTGATATCTTTTCCTTGGGAGCTTCTATATATGAACTCATTCGTGGATCACCTTTGCCAGAATCAGGATGTCAATTTTTAAATCTTAAAGAGGGCCGGTTGCCACTTCTGCCTGGCCATTCATTGCATTTTCAAAACTTACTCAAGGTTATGATGGACCCAGATCCCGTTAAGCGGCCTTCTGCCAGAGAGCTAGTGGAGAATCCAATCTTTGACAGGGCCCTAAGAAATGCAAAATATTAA	1500	0.4313	MKRKSHRRSSSSGRKERSKMKGTLARQLQVQLGQVSLFPLHHHPQPSSSAVSRFQNLLEAEARDSNLLSSSSNDMDHVVDASVDDKDFILSQDFFCTPDYITPDDQHIFNGLDCNKENIPCPKSPEKLNTTKSKRCRLDGISGNPLSPTLSGGHQQTVELGNDSVADEVDVEKLMAAGKPKAQNYVSHSVVALRCRVIPPPCIRNPYLKDTSEKDTDPYGNQRSKFAGLFPPITGGDGLSRYRTDFHEIEQIGKGNFSRVFKVLKRIDGCLYAVKHITRQLGQETESRKALMEVQALAALGSHENVVGYYSSWFENEQLYIQMELCDHSLSITKCSTMFTEGQALEALYQVANTLRFIHERGIAHLDVKPDNIYVKNGVYKLGDFGCATLLDKSLPIEEGDARYMPQEILNENYDHLDKVDIFSLGASIYELIRGSPLPESGCQFLNLKEGRLPLLPGHSLHFQNLLKVMMDPDPVKRPSARELVENPIFDRALRNAKY	499

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Glsi11g0533	499	Gene3D	Transferase(Phosphotransferase) domain 1	325	495	-	-
	Glsi11g0533	499	Gene3D	Phosphorylase Kinase; domain 1	237	324	-	-
	Glsi11g0533	499	ProSiteProfiles	Protein kinase domain profile.	246	490	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Glsi11g0533	499	Pfam	Protein kinase domain	246	490	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Glsi11g0533	499	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	363	375	IPR008271	GO:0004672\|GO:0006468
	Glsi11g0533	499	ProSitePatterns	Protein kinases ATP-binding region signature.	252	275	IPR017441	GO:0005524
	Glsi11g0533	499	PANTHER	EUKARYOTIC TRANSLATION INITIATION FACTOR 2-ALPHA KINASE EIF2-ALPHA KINASE -RELATED	41	491	-	-
	Glsi11g0533	499	MobiDBLite	consensus disorder prediction	1	24	-	-
	Glsi11g0533	499	FunFam	WEE protein kinase	236	324	-	-
	Glsi11g0533	499	SUPERFAMILY	Protein kinase-like (PK-like)	239	491	IPR011009	-
	Glsi11g0533	499	SMART	serkin_6	246	490	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Glsi11g0533	499	FunFam	Wee1-like protein kinase	325	494	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Glsi11g0533	Glsi-ChrGlsi11	3452600	3456783	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Glsi11g0533	2	492	Core Cell Cycle Gene Families	AT1G02970	60.931	0.0	603

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	WEE	Glsi11g0533		Pkinase	1.6e-48	CL0016