Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi11g0515 ATGTCCTCTGCAACTTGGATCACTTCCCTCTCATGTTCGTCCCCTGTAAAACAAACCTCGGGGGTTACATTCCTTTCAACTCTACCTCAATGGTTAAGATTCGTTTTCCTCTTCCCATGCCCTCAGAGAGCTCTCTTGTCTGCTGTTGACGTTGTACTCCTGCTCGTCCTCTTCGTGTTTGCCCTCAAAAAGCTCTATTCTAGGTTCACCGCCAATGGTGGCCCCACTTCTGAACTTAACAAGCCCCTTATCCGACATAACAGAGCTTTTGTCAGAACTAATTTATGGTTCAAGCTAACTCTAACTGCAACAGTTGTTTTGGCTATATTGTACACCGTCGCCTGCATTCTGGTATTTGGCAGAGCCACCCAAGTGCCATGGAAGCTAGTTGATGGACTGTTCTGGCTAGTTCAGGCTGTAACTCATTCGGTACTCGCAATCTTAATTATCCATGAAAAAAGATTCGAAGCTATTTCTCACCCGATATCACTTCGAATCTTTTGGGTTGCAAACTTCATTCTCATTTCTTTGTTCGCAGCGTCTGGGGTTATACGTTTGGTCTCTGTAGAAGAAACCGACGACTTCAGCTTTAAGATGGATGACATAGTCTCTTTCATTTCTCTCCCTCTGTCATTTTTTCTCCTTTTTGTTGCGATTAAAGGATCCAGTGGCATTAGGTCGACCCAAGAAGCGCAGCCGCTCATGGATGAGGAAACAAAGCTATACGATCCTAGTCTGAGCAAATCGAACGTTACTGGCTTTGCTTCAGCTTCTTTTGTATCCAAGGCCTTTTGGCTATGGATAAATCCCTTGTTGAGTAAAGGGTACAAGTCGCCTCTGAAGATTGATGAAGTTCCATTCCTTTCTCCGGAACATAGAGCTGAAAGGATGTCAGTACTCTTTGAATCGAAATGGCCTAAACCACGAGAAAGGTCGAACCACCCAGTTCTAACCACATTGATCCGATGTTTCTGGAAGGAAGCAGCCTTCACTGCCTTCCTTGCGGTTGTTCGGCTTTGTGTCATGTTTGTAGGGCCGGTTCTTATACAAAGTTTTGTTGATTTCACAGCAGGGAAGAGAAGCTCTGTATATGAAGGATACTACCTCGTGCTAATTCTCCTCATTGCCAAATTTATAGAAGTTTTGGCCACTCACCATTTCAACTTCAACTCTCAGAAGCTTGGAATGCTTATCCGATGCACTCTCATCACTTCATTGTACAAGAAGGGGCTAAGGCTATCGTGCTCTGCTCGGCAGGATCACGGTGTTGGAACTATTGTGAATTACATGGCTGTCGATGCTCAACAACTCTCTGATATGATGCTACAGCTTCATGCCATTTGGATGATGCCGTTTCAAGTTGGTATTGCCTTATTTCTGCTTTACAAATACTTAGGTGCCTCAGTCCTCACGGCTCTGATTGGAATTCTTGGGATTCTTGTGTTTGTTGTGTTTGGTACTCGAAGAAACAACCGTTTCCAATTTAATGTGATGAAGAATCGTGATTCAAGAATGAAAGCTGTGAATGAGATGCTCAATTACATGCGTGTGATCAAGTTCCAGGCATGGGAAGAACATTTCAACAAGAGAATCATGGATTTCCGTCAATCAGAATTTGAATGGCTCTCCAAGTTTATGTTTTCAATTTCTGGCAATATTGCTGTGATGTGGAGCACACCACTATTGATATCAACTCTCACGTTCGCTACGGCAATTTTGCTTGGAGTTCCACTTGATGCAGGGACGGTTTTCACCACAACAACAATCTTTAAAATCTTGCAGGAACCCATTAGGACGTTCCCACAGTCTATGATCTCTCTCTCACAAGCAATGATATCACTTGGGAGGTTGGATAGGTACATGATAAGTAGGGAATTATCGGATGATTCAATAGAGAAAGAGGAAGGGTGCGGTGGACGAACTGCTGTGGAGGTGAAAGATGGGGTCTTTTGTTGGGATGATGATAGCTGGGAGCACGACTTGAAAAACATTAATTTGGAGATCAAAAAGGGGGAGCTGACGGCTATAGTTGGGACTGTGGGTTCGGGAAAGTCTTCTCTCCTTGCATCAGTTCTTGGGGAGATGCACAAAATTTCTGGAAAGGTACGGGTTTGTGGGAGTACTGCCTATGTCGCACAAACATCATGGATTCAAAATGGAACCATTCAAGAAAACATCCTCTTTGATTTACCAATGAACAGACAGAAGTACTATGAGGTTATCAGAATTTGCTGCTTGGAGAAGGACTTTGAAATGATGGAGTATGGGGATCAGACAGAGATCGGAGAGCGTGGCATCAACCTAAGTGGAGGCCAGAAGCAGCGGATACAACTTGCCAGGGCTGTATATCAAGACTGTGATATCTATCTTCTTGACGATGTCTTCAGTGCTGTTGATGCCCATACTGGCTCCGAAATATTTAAGGAATGTGTGAGGGGAGCTCTAAAAGGCAAGACCATTATTCTTGTGACACACCAAGTAGACTTCTTGCATAATGTTGATCTTATATTAGTGATGAGGGATGGAATGATAGTCCAATCAGGGAAGTACAATGATCTGCTAGATTCGGGAATGGATTTTGGAGCTCTGGTAGCTGCACACGAAACTTCTATGGAGCTAGTAGAACAGAGTGCAGTCATGCCAGGGGAAAGTTCCCCCAAACCATCAAAGTCTCCAAAGGAAACTTCAAATCATTTTAGGGAAACAAATGGTGAAAGCAATTCTCCAGACCAGCCCACGGCTGGCAAGGAAAGTTCTAAACTCATCAAAGAAGAGGAGAGAGAAACTGGCAAAGTGAGCTTACATATATATAAACTTTATTGTACTGAGGCTTTTGGGTGGTGGGGCATTACAGGAGTATTGCTCCTTTCTTTGTTATGGCAAGCATCTCTGATGGCGGGGGATTATTGGCTGGCATATGAAACCTCAGAAGAGCGTGCTCATTTGTTTAATCCTTCTCTGTTTATCTCCGTCTACGCAATTATTGCTGTAGTTTCAGTTGTTTTGGTGGTGATAAGAGCCTTCTCCTTTACCATCTTGGGGCTCAAGACAGCACAAATTTTCTTCACACAAATTCTTCATTGCATCTTGCATGCCCCCATGGCTTTCTTTGACACTACACCTTCGGGAAGAATTTTAAGTAGGGCATCCACTGATCAGACCAATGTTGATGTCTTTCTCCCCTTGTTTGTGGGCATTGTTATTGCCATGTACATCACAGTGCTCGGCATCTTCATCATCACATGTCAAAACAGTTGGCCGACAGTTTTCTTGTTGATTCCTCTGATTTGGTTGAATATATGGTACCGGGGTTATTTCCTTGCTTCATCTCGTGAATTGACTCGCCTGGATTCAATTACAAAAGCACCTGTCATTCATCACTTCTCTGAAAGCATTTCGGGGGTCATGACAATCCGTGCATTCAGAAAGAAGGAAAAGTTTTGTGAAGAAAATGTTAAACGAGTGAATGCTAATTTGCGAATGGATTTCCACAACAACGGTTCCAATGAGTGGTTGGGTTTCCGTTTAGAATTGCTTGGAAGCTTGGTTTTTTGCTTTTCTGCTTTGTTCATGATCCTTTTACCGAGCACTATCATAAAGCCAGAAAACGTAGGTCTGTCTCTCTCTTATGGATTGTCCCTAAATGCTGTCATGTTCTGGGCTATATACATGAGCTGCTTCATTGAAAACAAAATGGTATCTGTTGAGAGGATTAAGCAGTTTACAAAAATTCCACCAGAAGCAGCATGGAATATTAAAGATCGTCTGCCTCCTCCTAATTGGCCCGCCCATGGCAATGTCAATATCAAAGACTTGCAGGTCAGATATCGTCCAAACTCTCCTCTGGTTCTTAAAGGCATTACTCTAAGCATTAGAGGGGGAGAGAAGATTGGTGTTGTTGGTAGAACAGGGAGTGGAAAATCAACTTTAATTCAAGTTTTCTTTAGGCTGGTGGAACCTTCAGGAGGGAGAATAATCATTGACGACATCGACATAACTGCCTTAGGGCTTCATGATTTAAGATCTCGGTTTGGTATCATTCCCCAGGAGCCTGTCCTGTTTGAGGGAACCGTCAGAAGTAACATTGATCCAACGGGACAGTATACAGAGGAGGAGATATGGAAGGGCCTAGAACGGTGTCAACTAAAAGATGCAGTGGCTGCTAAGCCTGAGAAACTGGATTCTTTAGTGGTTGATAATGGAGAGAATTGGAGTGTGGGACAGAGGCAGTTGCTGTGTCTGGGGAGGGTTATGCTTAAGCGAAGCCGTCTCTTGTTCATGGATGAGGCAACGGCTTCTGTTGATTCCCAAACTGATGCTGTAATTCAGAAGATCATCAGAGAGGACTTTGCAGCATGTACCATTATCAGCATTGCTCACAGAATACCAACAGTCATGGACTGTGATAGGGTTCTAGTGATAGATGCAGGGCGGGCGAAGGAATTTGATAAACCCTCCAACTTGCTTCAGAGGCCATCGCTGTTTGGGGCATTAGTTCAAGAATACGCCAACCGCTCCTCTGGACTTTAA 4530 0.4369 MSSATWITSLSCSSPVKQTSGVTFLSTLPQWLRFVFLFPCPQRALLSAVDVVLLLVLFVFALKKLYSRFTANGGPTSELNKPLIRHNRAFVRTNLWFKLTLTATVVLAILYTVACILVFGRATQVPWKLVDGLFWLVQAVTHSVLAILIIHEKRFEAISHPISLRIFWVANFILISLFAASGVIRLVSVEETDDFSFKMDDIVSFISLPLSFFLLFVAIKGSSGIRSTQEAQPLMDEETKLYDPSLSKSNVTGFASASFVSKAFWLWINPLLSKGYKSPLKIDEVPFLSPEHRAERMSVLFESKWPKPRERSNHPVLTTLIRCFWKEAAFTAFLAVVRLCVMFVGPVLIQSFVDFTAGKRSSVYEGYYLVLILLIAKFIEVLATHHFNFNSQKLGMLIRCTLITSLYKKGLRLSCSARQDHGVGTIVNYMAVDAQQLSDMMLQLHAIWMMPFQVGIALFLLYKYLGASVLTALIGILGILVFVVFGTRRNNRFQFNVMKNRDSRMKAVNEMLNYMRVIKFQAWEEHFNKRIMDFRQSEFEWLSKFMFSISGNIAVMWSTPLLISTLTFATAILLGVPLDAGTVFTTTTIFKILQEPIRTFPQSMISLSQAMISLGRLDRYMISRELSDDSIEKEEGCGGRTAVEVKDGVFCWDDDSWEHDLKNINLEIKKGELTAIVGTVGSGKSSLLASVLGEMHKISGKVRVCGSTAYVAQTSWIQNGTIQENILFDLPMNRQKYYEVIRICCLEKDFEMMEYGDQTEIGERGINLSGGQKQRIQLARAVYQDCDIYLLDDVFSAVDAHTGSEIFKECVRGALKGKTIILVTHQVDFLHNVDLILVMRDGMIVQSGKYNDLLDSGMDFGALVAAHETSMELVEQSAVMPGESSPKPSKSPKETSNHFRETNGESNSPDQPTAGKESSKLIKEEERETGKVSLHIYKLYCTEAFGWWGITGVLLLSLLWQASLMAGDYWLAYETSEERAHLFNPSLFISVYAIIAVVSVVLVVIRAFSFTILGLKTAQIFFTQILHCILHAPMAFFDTTPSGRILSRASTDQTNVDVFLPLFVGIVIAMYITVLGIFIITCQNSWPTVFLLIPLIWLNIWYRGYFLASSRELTRLDSITKAPVIHHFSESISGVMTIRAFRKKEKFCEENVKRVNANLRMDFHNNGSNEWLGFRLELLGSLVFCFSALFMILLPSTIIKPENVGLSLSYGLSLNAVMFWAIYMSCFIENKMVSVERIKQFTKIPPEAAWNIKDRLPPPNWPAHGNVNIKDLQVRYRPNSPLVLKGITLSIRGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGRIIIDDIDITALGLHDLRSRFGIIPQEPVLFEGTVRSNIDPTGQYTEEEIWKGLERCQLKDAVAAKPEKLDSLVVDNGENWSVGQRQLLCLGRVMLKRSRLLFMDEATASVDSQTDAVIQKIIREDFAACTIISIAHRIPTVMDCDRVLVIDAGRAKEFDKPSNLLQRPSLFGALVQEYANRSSGL 1509
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Glsi11g0515 1509 CDD ABC_6TM_ABCC_D2 950 1242 IPR044726 GO:0140359
Glsi11g0515 1509 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 952 1230 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Glsi11g0515 1509 SUPERFAMILY ABC transporter transmembrane region 317 621 IPR036640 GO:0005524|GO:0016020
Glsi11g0515 1509 Pfam ABC transporter 661 794 IPR003439 GO:0005524
Glsi11g0515 1509 FunFam ABC transporter C family member 10 312 625 - -
Glsi11g0515 1509 CDD ABCC_MRP_domain2 1265 1485 - -
Glsi11g0515 1509 MobiDBLite consensus disorder prediction 901 915 - -
Glsi11g0515 1509 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 641 863 IPR027417 -
Glsi11g0515 1509 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 643 866 IPR003439 GO:0005524
Glsi11g0515 1509 FunFam ABC transporter C family member 3 1250 1501 - -
Glsi11g0515 1509 Gene3D - 1250 1499 IPR027417 -
Glsi11g0515 1509 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 255 1503 - -
Glsi11g0515 1509 MobiDBLite consensus disorder prediction 875 921 - -
Glsi11g0515 1509 SUPERFAMILY ABC transporter transmembrane region 947 1247 IPR036640 GO:0005524|GO:0016020
Glsi11g0515 1509 CDD ABCC_MRP_domain1 643 842 - -
Glsi11g0515 1509 Pfam ABC transporter transmembrane region 332 596 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Glsi11g0515 1509 Pfam ABC transporter transmembrane region 983 1194 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Glsi11g0515 1509 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1267 1501 IPR003439 GO:0005524
Glsi11g0515 1509 Gene3D ABC transporter type 1, transmembrane domain 913 1248 IPR036640 GO:0005524|GO:0016020
Glsi11g0515 1509 Gene3D ABC transporter type 1, transmembrane domain 302 621 IPR036640 GO:0005524|GO:0016020
Glsi11g0515 1509 FunFam ABC transporter C family member 4 626 884 - -
Glsi11g0515 1509 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1259 1500 IPR027417 -
Glsi11g0515 1509 ProSitePatterns ABC transporters family signature. 768 782 IPR017871 GO:0005524|GO:0016887
Glsi11g0515 1509 Gene3D - 622 881 IPR027417 -
Glsi11g0515 1509 SMART AAA_5 1293 1486 IPR003593 GO:0016887
Glsi11g0515 1509 SMART AAA_5 670 851 IPR003593 GO:0016887
Glsi11g0515 1509 Pfam ABC transporter 1284 1432 IPR003439 GO:0005524
Glsi11g0515 1509 CDD ABC_6TM_ABCC_D1 330 617 IPR044746 GO:0140359
Glsi11g0515 1509 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 329 609 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Glsi11g0515 1509 FunFam ABC transporter C family member 5 913 1248 - -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Glsi11g0515 Glsi-ChrGlsi11 3357624 3363332 Dispersed/Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi11g0515 640 859 Calmodulin-binding Proteins AT2G36910 30.932 1.24e-22 103