Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi11g0490 ATGGACTCACTCACTCCCTCAAACTATGCCCTTAACGGCAAGGTCATGCTCGCCTCCGCCCTCCTTCTCTTCCTCTTCCTCTTCCTCCTCTTCATCATCTTCTTTCACACCCATGGCTACATGTGCTTCTTTCGCCGCCGTGACAGTCGTCGTCGCCTCTTCCGTACCTCCTCCGCCCAGGGACTTGACCCTTCCGTTCTTAAATTCCTTCCCACCTTCACTTACTCCTCCGACACACATCGCCCGCTGCAGGATTGTGCCGTGTGCTTATCGGAGTTTGAAGACGAAGACGAAGGTCGCCTTCTGCCAAGCTGTAACCACGCTTTCCACACTCATTGCGTGGATACATGGTTCCGCTCTCACTCCATCTGTCCATTATGTAGAGGTCCGGTTCTTCAACCCGATTTCCTGGCCCGACCTTGTAAAACATGGCTATCTAGCACTGAAACGTCGTCTGTTTCAGAGCGAGATGATGTGGGTATGGGTTGCTCGTCTCTTCCTGCACGGAGAAAAGCTTTAGAGGAGAGGTTGAGAGGGTGGGAGGGGATGGGATCCGCAGCACCCGGAGACCGCGGCTTCCAAACTTCGGATCATCGGATTCTCTCTTTAAGGAAGACATTGAGTGTATAG 630 0.5317 MDSLTPSNYALNGKVMLASALLLFLFLFLLFIIFFHTHGYMCFFRRRDSRRRLFRTSSAQGLDPSVLKFLPTFTYSSDTHRPLQDCAVCLSEFEDEDEGRLLPSCNHAFHTHCVDTWFRSHSICPLCRGPVLQPDFLARPCKTWLSSTETSSVSERDDVGMGCSSLPARRKALEERLRGWEGMGSAAPGDRGFQTSDHRILSLRKTLSV 209
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi11g0490 209 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 48 132 IPR013083 -
Glsi11g0490 209 FunFam E3 ubiquitin-protein ligase ATL6 50 134 - -
Glsi11g0490 209 ProSiteProfiles Zinc finger RING-type profile. 86 128 IPR001841 -
Glsi11g0490 209 SUPERFAMILY RING/U-box 68 134 - -
Glsi11g0490 209 Pfam Ring finger domain 85 128 IPR001841 -
Glsi11g0490 209 CDD RING-H2_EL5-like 85 128 - -
Glsi11g0490 209 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 22 200 - -
Glsi11g0490 209 SMART ring_2 86 127 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi11g0490 Glsi-ChrGlsi11 3208988 3209617 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi11g0490 8 131 Rapid Response to Elicitors AT3G16720 39.860 1.67e-33 120