Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi11g0488 ATGGCTTCCAAACTCGCAGCAATCGCACTTGTCATTCTTCTTCCCATGTCCTTTGCTTCTCTAGCTTGTGCAGACAACACCCCGCCCAACTCTTTTTTCTCTCCTGGAACCCTATGCCAATATACCCCAGAACCATCTTATTGCAAGTCTGCTCTTTCTCCCCAAAATGGCAGCGTCTACGACTATGGTCGGTTTTCTGTCATAAATTCCATATCACGGGCCCGCAAATTCTTGATCCTCCTTGACAGGTATCTCCAACGACGCTCTACTCTGTCTCGCGCCGCCATTGGTGCCCTGGAAGATTGTCAGACGCTTGCCCAGTTGAACTTCGATTTCCTTTCGAGTTCCTATCCAACCGTTAATAAGACATCTAGGTTTCTACCCACAGTACAAGCTGACTACATCCAAACCTTGCTTAGTGCCATTTTAACCAACCAGCAAACCTGCTTGGATGGCCTTCAAGACACTGCTTCAGCTACGAGTATCAGAAATAGGCTTTCTGTCCCACTTTCCGACGACACCAAGCTTTACAGTGTCTCTTTAGCTCTTTTTACAAAGGGCTGGGTGCCCAGAAGTCAAAAGAAACCCAAAGGATGGCAACCCACCAACAACCAACGTGAATTCCGAAATGGGCGCTTGCCCCTTAAGATGTCAATCAGAACCCGCAAGATCTACGAGGCAGTGAGTCGGAGAAAACTTGTTCAGACCACAAATGAGGAAGACGTTTTGGTGGAAGACATCGCAACAGTAAGTCAAGACGGAAGCGGACACTTCACTACCATCAATGACGCCATTGCTGCAGCTCCAAACAGGTCTTCCTCTACGGATGGGTACTACTTGATCTACGTCTCCGAGGGTGTTTACGAAGAATACGTGTCCATTGACAAGAAAGACACGAAATTGATGATGGTGGGAGACGGTATCAACAAGACTATTATTACAGGCAATCGCAGTGTCGGGGATGGGTGGACAACCTTCAGATCCGCAACCTTTGCTGTGACTGGGTCAGGATTCGTGGGGGTGAATATAACTTTTCGTAACACTGCGGGTGCTGCAAAACACCAGGCGGTGGCAGTTCGAAATGGGGCAGATTTGTCCGCATTTTATAGCTGCAGCTTCGAAGGATACCAAGACACCTTATATACGCATTCCCTTAGACAATTCTACAGAGAATGTGATATCTACGGTACAGTGGATTTTATATTTGGAAACGCAGCGGTTGTGTTCCAAAACTGCAACATCTTTGCCCTTTTGCCCATGAGTGGGCAATTCAATGCCATCACAGCACAAGGTCGATCTGACCCCAATCAAAATACGGGGATGTCAATCCATAATTGTACAATTCGAGCAGCTGATGATTTGGCCGCGAGCAGTGGTGTGGTTGCAACTTATTTAGGAAGGCCCTGGAAGCTGTTCTCGAGGACAGTTTACATGCAGAGCTTCATAGATGGTGTGATCGATGGTGCCGGTTGGCATGCGTGGGACGGTGATTTTGCGTTAAACACATCGTATTACGCGGAGTTCAATAACAGTGGGGAAGGGTCCACCACCGTCCAAAGGGTGACATGGCCCGGTTACCATGTGATTAACGCCACAGATGCAGCTAATTTCACGGTGTCCAACTTCTTGCTAGGGGATGACTGGTTGCCCCATACTGGAGTCACTTACACCAGCGCCTTAATTTGA 1686 0.4804 MASKLAAIALVILLPMSFASLACADNTPPNSFFSPGTLCQYTPEPSYCKSALSPQNGSVYDYGRFSVINSISRARKFLILLDRYLQRRSTLSRAAIGALEDCQTLAQLNFDFLSSSYPTVNKTSRFLPTVQADYIQTLLSAILTNQQTCLDGLQDTASATSIRNRLSVPLSDDTKLYSVSLALFTKGWVPRSQKKPKGWQPTNNQREFRNGRLPLKMSIRTRKIYEAVSRRKLVQTTNEEDVLVEDIATVSQDGSGHFTTINDAIAAAPNRSSSTDGYYLIYVSEGVYEEYVSIDKKDTKLMMVGDGINKTIITGNRSVGDGWTTFRSATFAVTGSGFVGVNITFRNTAGAAKHQAVAVRNGADLSAFYSCSFEGYQDTLYTHSLRQFYRECDIYGTVDFIFGNAAVVFQNCNIFALLPMSGQFNAITAQGRSDPNQNTGMSIHNCTIRAADDLAASSGVVATYLGRPWKLFSRTVYMQSFIDGVIDGAGWHAWDGDFALNTSYYAEFNNSGEGSTTVQRVTWPGYHVINATDAANFTVSNFLLGDDWLPHTGVTYTSALI 561
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi11g0488 561 SMART PMEI_2 28 183 IPR006501 GO:0004857
Glsi11g0488 561 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 37 186 IPR035513 -
Glsi11g0488 561 CDD PMEI-like_3 37 188 - -
Glsi11g0488 561 Gene3D Invertase/pectin methylesterase inhibitor family protein 36 186 IPR035513 -
Glsi11g0488 561 Gene3D - 243 560 IPR012334 -
Glsi11g0488 561 SUPERFAMILY Pectin lyase-like 247 557 IPR011050 -
Glsi11g0488 561 FunFam Pectinesterase 36 186 - -
Glsi11g0488 561 Pfam Pectinesterase 248 546 IPR000070 GO:0030599|GO:0042545
Glsi11g0488 561 ProSitePatterns Pectinesterase signature 2. 394 403 IPR033131 -
Glsi11g0488 561 FunFam Pectinesterase 242 560 - -
Glsi11g0488 561 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 23 - -
Glsi11g0488 561 Pfam Plant invertase/pectin methylesterase inhibitor 37 183 IPR006501 GO:0004857
Glsi11g0488 561 PANTHER PECTINESTERASE 17 550 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi11g0488 Glsi-ChrGlsi11 3203021 3205091 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi11g0488 5 561 Carbohydrate Esterase AT4G02330 59.652 0.0 689