Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi11g0487 ATGGCTTTCAAGCTCTTTTCTCTTTTTACACACTTGGCTTTCCTTTTGCTTTCCTTCTTTGCATTATTATCTATGGCAGATAATCGTGCAACCTCCATCGTTCCGCCAGAAACCATTTGTGGCTCCACTTTAGACCCTTCTTATTGCAAAACTGTCCTTGCCAAGCAAAATGGCAACATCTTTGACTATGGCCGCATATCCCTTCGAAAGTCCCTGTCCCAGTCCCGTAAGTTCTCGAACTTAGTGAACTCATATCTTCAAGGTCAATCATCTCTGTCTCAATCCACAATTCGGGCTCTCGAAGATTGTCGATTCCTTGCTGAACTAAACTTCGAATCCTTATCAAACACCTTGGATACTGTTAATAAAGTTAGCGATTTTCTGCCTTCTTCTGAAGCCGAAGATCTTCAAACCTTGTTCAGTGCCATTTTGACAAACCAGCAAACTTGTTTGGATGGCCTCGACACCACAGCTTCCGATCAAAGAGTGAAGGACGATCTTTCCTCCACACTGTCCAATGATACCAAGCTTAACAGTGTCTCTCTAGCTCTGTTCACGAAGGGTTGGGTTCCGGATAAGGAAATCACAACATCATGGCAACGCAATGGGAGACATTTGGAGTTCCGGAATGGTCGTTTACCATTGAAAATGTCAGACCGAGTACGTGCTATTTATGATTCCGCAAGAGGCCACGGCAGGAAACTGCTTCAGACTGACGAAAGTGTGGTCATCACAGACATTGTGGTTGTCAGTCAGGATGGAAGCGGAAACTTCACCACCATCAACGACGCCATTAATGCTGCCCCGAATAACACAGCTTCTAGTGGTGGCTATTTCTTGATTTTTATCACCGAGGGTGTGTACCAAGAATACGTATCCATACCCAAAAACAAGAAGTACTTAATGTTAGTTGGAGATGGAATTAACAGCACAATTATTACTGGCGATCACAACGTTGTGGATGGTTTTACAACATTCAATTCTGCAACATTTGCTGTGGTAGCACAAGGGTTCGTGGCAGTGAACATAACATTCCGTAACACTGCTGGGACAAGCAAGCACCAAGCAGTTGCACTAAGAAACGGAGCAGATTTGTCGACCTTCTATAGCTGCAGCTTCGAAGGCTACCAAGACACTCTGTATACGCATTCTCTGAGGCAATTTTACAGAGAATGTGACATCTATGGCACCGTTGACTTCATATTTGGAAACGCAGCGGTTGTTTTGCAGAACTGCAACATCTATCCACGCCTCCCCTCCAGTGGGCAGTTCAATGCCATCACTGCTCAGGGTCGAACTGACCCAAATCAAAACACGGGCACTTCCATACAGAACGCCACTATAAAAGCCGCAGATGATTTGGCTCCCGTGGTTGGTTCGGTGCAAACATACCTTGGGAGGCCTTGGAAGGAGTACTCGAGGACTGTTTTCATGGAGTCTTTCATGGACAGTTTAATAGATAGTGCTGGTTGGCATGAATGGAGTGGGAGTTTTGCATTGAGCACTTTGTACTACGCAGAGTATGATAACAGGGGGCCTGGTTCCAACACTGCCAATAGAGTAACATGGCCTGGTTACCATGTCATTAATGCCACGGATGCAGCTAATTTTACAGTCTCCAACTTCTTGATGGGGGATGATTGGCTGCCTCAAACTGGCGTTCCATATTCCAGTGGATTTATATAG 1686 0.4526 MAFKLFSLFTHLAFLLLSFFALLSMADNRATSIVPPETICGSTLDPSYCKTVLAKQNGNIFDYGRISLRKSLSQSRKFSNLVNSYLQGQSSLSQSTIRALEDCRFLAELNFESLSNTLDTVNKVSDFLPSSEAEDLQTLFSAILTNQQTCLDGLDTTASDQRVKDDLSSTLSNDTKLNSVSLALFTKGWVPDKEITTSWQRNGRHLEFRNGRLPLKMSDRVRAIYDSARGHGRKLLQTDESVVITDIVVVSQDGSGNFTTINDAINAAPNNTASSGGYFLIFITEGVYQEYVSIPKNKKYLMLVGDGINSTIITGDHNVVDGFTTFNSATFAVVAQGFVAVNITFRNTAGTSKHQAVALRNGADLSTFYSCSFEGYQDTLYTHSLRQFYRECDIYGTVDFIFGNAAVVLQNCNIYPRLPSSGQFNAITAQGRTDPNQNTGTSIQNATIKAADDLAPVVGSVQTYLGRPWKEYSRTVFMESFMDSLIDSAGWHEWSGSFALSTLYYAEYDNRGPGSNTANRVTWPGYHVINATDAANFTVSNFLMGDDWLPQTGVPYSSGFI 561
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi11g0487 561 ProSitePatterns Pectinesterase signature 2. 394 403 IPR033131 -
Glsi11g0487 561 SMART PMEI_2 31 184 IPR006501 GO:0004857
Glsi11g0487 561 Pfam Pectinesterase 248 546 IPR000070 GO:0030599|GO:0042545
Glsi11g0487 561 CDD PMEI-like_3 38 189 - -
Glsi11g0487 561 Gene3D - 242 560 IPR012334 -
Glsi11g0487 561 FunFam Pectinesterase 241 560 - -
Glsi11g0487 561 Gene3D Invertase/pectin methylesterase inhibitor family protein 37 187 IPR035513 -
Glsi11g0487 561 PANTHER PECTINESTERASE 23 550 - -
Glsi11g0487 561 SUPERFAMILY Pectin lyase-like 245 559 IPR011050 -
Glsi11g0487 561 FunFam Pectinesterase 37 187 - -
Glsi11g0487 561 Pfam Plant invertase/pectin methylesterase inhibitor 37 184 IPR006501 GO:0004857
Glsi11g0487 561 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 38 187 IPR035513 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi11g0487 Glsi-ChrGlsi11 3198107 3199886 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi11g0487 14 561 Carbohydrate Esterase AT1G02810 60.348 0.0 681