Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi11g0486 ATGTTCAACCTCACAAGAAGAAGAGCACTCATGCTTGCCCTTGTACCCGTTTTCTCTCTAGTCTTGGTGCTGCTCTCTGCAGTAACCCCAAAACCCACAGAAAAACACCTCCATTTCCAAAAACATATTCAAGTAGCACAATCCACATGCCAAGGAACACTCTACCCAGACCTCTGTGTTTCTACCCTGGCTTCCTTCCCCGATCTTAGCTCCAAATCTGTTCCGCAAATGATCTCCTCCGTCATCAACCACACAGTCTACGAGGTCAGATCATCTTCCTCCAACTGCAGCGGCCTACGAAAGAAGCTCAGAAATCTAAAACCGCTTGAACAGAGAGCTCTGGATGATTGCGTCAAACTGTTTGACGACACCATCGAGGAGCTCCAAACTAGCATTGCAGATCTCTCCAAAACTCAACTAGGTTCGAAGCCTCAACTAGGTTCGAAGCGCAGCCACCATTTGCAGACTCTGCTGAGCGGCGCAATGACCAATGTGTACACGTGCCTGGATGGGTTTGCCTACAGCAAAGGGAATGTAAGAGGTATAATCGAGTACAAGTTGTTTAAGATTAGCCATCACGTTAGTAACTCGTTGGCCATGCTAAAGAAAGTACCCGGTGTGAAGAAAGCGTCCAACTCTGAGGCCTTTCCTGAGTACGGAAGAATGAAACATGGGTTCCCATCGTGGGTGACCTCCAAAGACCGAAAGCTCCTTCAAGCAGCTCCCAATGAAACCAAGTTTGATCTTGTGGTGGCCAAAGACGGCACTGGAAATTTCACCACTATAGGGGAAGCAGTAGCTGCAGCTCCAAACTCCAGCACAACCAGGTTTGTGATACACATAAAAGCCGGGGCCTACTTTGAGAATGTGGAGGTGACCAGGAAGAAGCAAAATCTGATGTTCGTTGGAGACGGGATAGGGAAGACGGTAGTGAAAGCCGGTAGAAATGTTGTGGATGGGTGGACCACTTTCCAATCAGCTACTGTAGCTGTGGTAGGAGATGGATTCATAGCGAAGGGCATAACAATTGAGAACTCGGCAGGGCCCAGCAAACACCAAGCAGTGGCCCTCAGGAGTGGTGCTGACTTCTCCGCATTCTACAAATGCAGCTTTGTTGGCTACCAAGACACTCTCTACGTCCACTCCCTTCGTCAGTTCTATCGTGAATGCGACATTTATGGCACCATAGACTTCATCTTCGGCAATGCAGCTGTTGTCCTCCAGAACTGCAACTTGTATGCCCGCAAGCCCAACGAAGACCAGAAGAACCTCTTCACTGCTCAAGGCAGAGAGGATCCCAACCAAAACACCGGAATTTCTATCCTCAACTGCAAGGTCGCTGCCGCCGCGGATTTAATCCCAGTTAAATCCTCCTTTGAGACCTACTTAGGCAGACCCTGGAAGATGTATTCTAGGACCGTCTATCTGAAATCTTACATGGAGGATTTGATTGACCCCAAAGGATGGTTGGAATGGAATGGCAGTTTTGCATTAGACACACTGTATTATGGGGAGTACATGAATAGGGGTCCGGGCTCCAATACCAGCGACAGGGTTAAATGGAGAGGTTATAGGGTCATCAACTCCTCCGCTGAGGCTGCCCAGTTCACGGTTGCTCAGTTTATACAAGGCAATGACTGGTTGAATTCCACCGGTATTTCCTTCTTCCCCAATTTGACCGTCTCCTAA 1689 0.4861 MFNLTRRRALMLALVPVFSLVLVLLSAVTPKPTEKHLHFQKHIQVAQSTCQGTLYPDLCVSTLASFPDLSSKSVPQMISSVINHTVYEVRSSSSNCSGLRKKLRNLKPLEQRALDDCVKLFDDTIEELQTSIADLSKTQLGSKPQLGSKRSHHLQTLLSGAMTNVYTCLDGFAYSKGNVRGIIEYKLFKISHHVSNSLAMLKKVPGVKKASNSEAFPEYGRMKHGFPSWVTSKDRKLLQAAPNETKFDLVVAKDGTGNFTTIGEAVAAAPNSSTTRFVIHIKAGAYFENVEVTRKKQNLMFVGDGIGKTVVKAGRNVVDGWTTFQSATVAVVGDGFIAKGITIENSAGPSKHQAVALRSGADFSAFYKCSFVGYQDTLYVHSLRQFYRECDIYGTIDFIFGNAAVVLQNCNLYARKPNEDQKNLFTAQGREDPNQNTGISILNCKVAAAADLIPVKSSFETYLGRPWKMYSRTVYLKSYMEDLIDPKGWLEWNGSFALDTLYYGEYMNRGPGSNTSDRVKWRGYRVINSSAEAAQFTVAQFIQGNDWLNSTGISFFPNLTVS 562
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi11g0486 562 CDD PMEI-like_3 48 206 - -
Glsi11g0486 562 PANTHER PECTINESTERASE 23 549 - -
Glsi11g0486 562 Gene3D Invertase/pectin methylesterase inhibitor family protein 44 206 IPR035513 -
Glsi11g0486 562 FunFam Pectinesterase 242 559 - -
Glsi11g0486 562 SUPERFAMILY Pectin lyase-like 246 557 IPR011050 -
Glsi11g0486 562 SMART PMEI_2 41 200 IPR006501 GO:0004857
Glsi11g0486 562 Gene3D - 243 559 IPR012334 -
Glsi11g0486 562 Pfam Plant invertase/pectin methylesterase inhibitor 47 200 IPR006501 GO:0004857
Glsi11g0486 562 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 47 204 IPR035513 -
Glsi11g0486 562 NCBIfam pectinesterase inhibitor domain 19 203 IPR006501 GO:0004857
Glsi11g0486 562 Pfam Pectinesterase 248 545 IPR000070 GO:0030599|GO:0042545
Glsi11g0486 562 FunFam Pectinesterase 42 205 - -
Glsi11g0486 562 ProSitePatterns Pectinesterase signature 2. 392 401 IPR033131 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi11g0486 Glsi-ChrGlsi11 3188164 3192659 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi11g0486 70 559 Carbohydrate Esterase AT4G02320 54.274 0.0 561