Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi11g0476 ATGGGCAGTTTTGGTTTGCACCGTTTGAAGCTGTACAAATCCAGGAGCGCTGCTGGTTTTTGCCTTCCCAAAGTTTGTTTTGCTTGGAAATTAACAGACCCGGCGGGACGCAATTCAGTGGGCGCTTACGGAATTGGGCAACTTCAACTTCAAGGACGCCGACCCATCTTTGTACCGTGGGGGGGGGGGGGTAATATATTCACATCCTACGCCACAGCATCGGCAGCTATCAGAGAGAGAGAGATGGTTTCGCTGAAACTCCAGAAGCGGCTTGCTGCTAGCGTGCTAAAGTGCGGCAGAGGCAAGGTTTGGTTGGATCCCAATGAATGCAATGAAATCTCCATGGCCAATTCTCGCCAAAACATAAGGAAGTTGGTCAAGGATGGCTTCATTATCAGGAAGCCAACCAAAATTCACTCTCGTTCACGTGCTCGTCGAATGAAGGATGCCAAGAGAAAAGGACGCCACTCTGGATATGGTAAGCGTAAGGGTACAAGGGAGGCAAGGCTTCCCACCAAAATCCTTTGGATGAGGAGGATGCGAGTGCTCAGACGCTTACTACGCAAGTACAGGGAATCAAAGAAGATTGACAAGCACATGTACCATGACATGTACATGAAGGTAAAGGGAAACGTTTTTAAGAACAAAAGAGTTCTAATGGAGAGTATACACAAGTCGAAGGCTGAGAAGGCAAGAGAGAAGACCTTGTCTGACCAGTTTGAGGCCAAGCGTGCAAAGAACAAGGCAAGCAGGGAAAGGAAATTTGCCCGGAGAGAGGAACGCTTGGCCCATGGTCCTGGAGAAAAGCCATCAGCAGCACCATCCGCTCCTCCTACTACAGCATCCCAGCCAGCCCAAGCATCAAAGAAATCCAAGAAGTGA 882 0.4932 MGSFGLHRLKLYKSRSAAGFCLPKVCFAWKLTDPAGRNSVGAYGIGQLQLQGRRPIFVPWGGGGNIFTSYATASAAIREREMVSLKLQKRLAASVLKCGRGKVWLDPNECNEISMANSRQNIRKLVKDGFIIRKPTKIHSRSRARRMKDAKRKGRHSGYGKRKGTREARLPTKILWMRRMRVLRRLLRKYRESKKIDKHMYHDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNKASRERKFARREERLAHGPGEKPSAAPSAPPTTASQPAQASKKSKK 293
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Glsi11g0476 293 Gene3D - 83 137 IPR015972 GO:0003735|GO:0005840|GO:0006412
Glsi11g0476 293 MobiDBLite consensus disorder prediction 138 160 - -
Glsi11g0476 293 Pfam Ribosomal protein L19e 85 226 IPR000196 GO:0003735|GO:0005840|GO:0006412
Glsi11g0476 293 FunFam Ribosomal protein L19 138 272 - -
Glsi11g0476 293 Hamap 50S ribosomal protein L19e [rpl19e]. 84 230 IPR000196 GO:0003735|GO:0005840|GO:0006412
Glsi11g0476 293 PANTHER 60S RIBOSOMAL PROTEIN L19 82 269 IPR039547 GO:0003723|GO:0003735|GO:0022625
Glsi11g0476 293 MobiDBLite consensus disorder prediction 225 266 - -
Glsi11g0476 293 MobiDBLite consensus disorder prediction 225 293 - -
Glsi11g0476 293 MobiDBLite consensus disorder prediction 275 293 - -
Glsi11g0476 293 FunFam Ribosomal protein L19 82 137 - -
Glsi11g0476 293 ProSitePatterns Ribosomal protein L19e signature. 88 107 IPR023638 -
Glsi11g0476 293 CDD Ribosomal_L19e_E 85 248 IPR033935 GO:0003735|GO:0022625
Glsi11g0476 293 MobiDBLite consensus disorder prediction 138 166 - -
Glsi11g0476 293 Gene3D - 138 268 - -
Glsi11g0476 293 SMART Ribosomal_L19e_2 84 227 IPR000196 GO:0003735|GO:0005840|GO:0006412
Glsi11g0476 293 SUPERFAMILY Ribosomal protein L19 (L19e) 84 225 IPR035970 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Glsi11g0476 Glsi-ChrGlsi11 3134483 3137202 Dispersed/Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi11g0476 82 293 Cytoplasmic Ribosomal Protein Gene Family AT3G16780 83.962 1.88e-125 355