Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi11g0455 ATGTTGGGAACCAGTTATCCATCGCAAGTGTTTCTCGGTCTTCATTTTGTTCTCTTTGGTTTTGATCCCGTCAGCGAAAGCAAGGTTCGATTCAAGCTTATAAATGGCGGTGGAGTTGATGTAGGTCATTACAGTCCAAGTTGTACACATGTCATTGTGGGCAAGCTTGCATATGATGATCCTGTTTGCGTTGCTGCAAGAAATGATAGGAAGACGCTTGTCACTGCATTGTGGGTTGATCATAGTGCTGATATTGGAATGCCTGTTGATGCTGCCTCGGTTATGTACAGGCCTCTAAAAGATTTAAATGGAATACCGGGTGCCAAGAATTTGATTGTGTGCTTGACGGGGTATCAACGTCAGGATCGGGATGACATTATGACAATGGTTGGCCTGATGGGTGCACAATTTTCAAAACCATTGGTAGCAAACAAGGTTACTCATCTTATATGCTACAAATTTGAAGGGGAGAAGTATGAGCTTGCCAAGAGATTGAAGACAATTAAGTTAGTGAATCATCGGTGGCTGGAAGATTGTTTAAAAGATTGGGTGCTTCTTCCTGAAGATAAATATAACAAGAGTGGTTATGAACTGGAGATAATGGCGGCAGACGCTAAAGATTCTGAAGAAGAAGCTGAAGATCTCGTGCCAGGGCAATCTGGGGGAAGAAATCTAATTAAGAGTCCCGTTAGTTCAAAAATTAGTACAGCTACAACCCATAAATTGTCAAAATCAGCAAGAGAGGCAGTAAATGCCTTCCCAGATTCTACTGCTCCTGAGGGATCGGTAAAAGTGACTAAGAGGCATGAAACTCATGACTCATTTATTCCAGAATATGAGAACAGATCTGATCAAGCCTTATGCTTTCCTCATGTTGATGATCTAAAAATAAGTTGTCAGGATTCTGGTGTTTCTAGGCATGTTGCATCTGGTCAGCTACCTGAAACATTTGTTAAGACTACTAAACCTAGGAATACCAATGTTCCAAAGGCAGTTGACTGCCAAGATCTTGGCATGCCTGGAAATGCTAAAGCATTTGGGGCTGGCACTTCTGAGTTTGGGAAGTTGGCTAATGACTTGGGATTAACTCCTGAAAGTGCTGAAGGACTTGAACATTCAGATGCAAAAGTTAATGCTATCAGCTGCTCTAGGAAGTACATAAAGAGATTTTCTCTTCCAAGGAATGAAAATGAAAGCTCTGGCAACGTAAGTGGCCCTTCTGGCTCATCTTTGGATGATATGAAATTTGTCAACAACCTAGAAACCTCTTCCAGCAAAGGGGAAAAGGCAAGCGACAGCTTCCCCTGTGTTGAAGGTTCTGGGAAAGGAAATGATTTCATCGACAGCAGAGAGCCTATTAGTTTATTGCCACAAAAGAGGACGATTGAAACTTCTACTAAACCCGAATCAAAGATGACTGCTGATGCAAAATTGTCCATTGAAAGAATCCCATCTCCAAATGGTATAACACAAGGATTGAAACTGACATCTCTGATCAATGAACCACCTGAGACTGAAGACCATTTTTCTGTTGGCAAAGATGCTATAAAGAGCCCAGAAAGTGTGAGCTCAAAGTCTATGCAATGGAATGATGCCCATCAAAATTCAGCTCAAACGTCTGTCCGTAACTTAAGTGAGTCTAAAATTAATGGCAAGCCTAATATCGCATGTTTGGGCATGAGAGAAGTTGCTCATAATGGTATTGAAACTAATCCACCGAATGCTGAGAATGATACTGGATGCTTATATCCAGGTAACAAGAAGTCTCAGAATGAGGAACCAACTGGTCTTAGTACTCTGAATTTATGCAATAAAGTAACTGATGAGTTGATTAGAAAATCGCCCCGCAGGAAGACAGTTGCCAAGAAATGTTTGGGTTCTAGACGTAAATTAGGTGCTACTGCTAAACAGAAGGATTTGATTTCCTTAAACGAAAGTTCCCCTCAATGTGATAGTGTAAGTTGCTTCAGTGGATGCAAAGAGACAGTAACTTATGATGGCAAGAAGCTTCATACATCCTCCCGAATCGTTGGTGTTGAAACATCACTGGAGCAGGAAAATGTTAGGAAATCTGCAGAAAATGCTGGTGGCAGAGAATTTCTGGATGACGAGACAGAGTCACCAGATAACTGTGAATATGAGTTGGGAATAGCACTCGATGAAAACAAGGCTGAATTGGTTCATATTTCGAAGAAAGCAGATGCACCGGCGGAACAGAAGATGGAAGCGATTCACCATATAACAAAATGTAAAGAAGCAATGCCTGCAAAGAAAGGCACAAAGAGGACTGAACAGAAGGTACTTGAGCCTGTAGACTCAACCTCAAAAGTAAAAGAAAAGAATAAAGGGAGAAAACTTCCTGCAGGTAGAACAAACAAGACAACAGTTGCCAAGGATCTAATGAGATCTAAGGAGGCTGTATGTGAGGTAAAGATGGACAATAAGAGGAAAGATAAGACAGGGATGGCAACCCTGGAAAAAGTGTCACTTTCTGCTGTTCAAAATGACAGGTCAACTATACCAACAAATAATTCGGAGAATTTCCTAAAAGCGGAGAAGGAGAACAGACCAATTGATGGAGAGAAGGATATTGGGGAGGGTATAAACGTCGGAAATTCAGCTATTAAATCTATTGTAGGTCCTGCTAAGATCCATCAAAAGGATAAGAAAACGGCTATTACTTCATCCATATCAGAAGATAACAAAAGAGTGAAAAGAGAAGCTGCATGTTTTATATTAAGTGGGCATCGCCTGCAGAGGAAGGAGTTTCAACAAATGATTAGGCGTTTGAAAGGAAGGGTTTGCCGGGATTCTCATCAGTGGTCATATCAGGCAACACACTTCATTGCCCCAGATCCTATACGCAGGACAGAGAAATTTTTTGCTGCTACTGCCTCAGGAAGGTGGGTTCTTAAAACTGATTACTTAACTGCTTGTAGCCAGGCAGGAAATTTTTTGGCAGAAGAGCCTTTTGAGTGGCACAAGAACGGCCTCAGTGAGGATGGGGCAATCAATATGGGGGCTCCAAGAAGATGGCGGCTGTTGAAAGAGAGGACGGGTCATGGGGCATTCTATGGAATGCGCATTATCATATATGGGGATTGCATTGCCCCACCTTTGGATGATAATGATGCGGCTTGCCAACTATGTGGATCCCGAGATAGAGGAGATGTAATGCTGATTTGTGGTGATGAAAGTGGTTCCGTTGGTTGTGGAATTGGCACCCATATCGATTGCTGCGATCCTCCACTGAAAGATGTCCCTGAGGAGGATTGGTTTTGTCCAAAATGCAGTGGAACCCGGAACTGCTCAAATTCTCCCAGGAAACGGAAAAAAAGTGTCTCGTCTTTATCGAATAGCAAGTGA 3366 0.4216 MLGTSYPSQVFLGLHFVLFGFDPVSESKVRFKLINGGGVDVGHYSPSCTHVIVGKLAYDDPVCVAARNDRKTLVTALWVDHSADIGMPVDAASVMYRPLKDLNGIPGAKNLIVCLTGYQRQDRDDIMTMVGLMGAQFSKPLVANKVTHLICYKFEGEKYELAKRLKTIKLVNHRWLEDCLKDWVLLPEDKYNKSGYELEIMAADAKDSEEEAEDLVPGQSGGRNLIKSPVSSKISTATTHKLSKSAREAVNAFPDSTAPEGSVKVTKRHETHDSFIPEYENRSDQALCFPHVDDLKISCQDSGVSRHVASGQLPETFVKTTKPRNTNVPKAVDCQDLGMPGNAKAFGAGTSEFGKLANDLGLTPESAEGLEHSDAKVNAISCSRKYIKRFSLPRNENESSGNVSGPSGSSLDDMKFVNNLETSSSKGEKASDSFPCVEGSGKGNDFIDSREPISLLPQKRTIETSTKPESKMTADAKLSIERIPSPNGITQGLKLTSLINEPPETEDHFSVGKDAIKSPESVSSKSMQWNDAHQNSAQTSVRNLSESKINGKPNIACLGMREVAHNGIETNPPNAENDTGCLYPGNKKSQNEEPTGLSTLNLCNKVTDELIRKSPRRKTVAKKCLGSRRKLGATAKQKDLISLNESSPQCDSVSCFSGCKETVTYDGKKLHTSSRIVGVETSLEQENVRKSAENAGGREFLDDETESPDNCEYELGIALDENKAELVHISKKADAPAEQKMEAIHHITKCKEAMPAKKGTKRTEQKVLEPVDSTSKVKEKNKGRKLPAGRTNKTTVAKDLMRSKEAVCEVKMDNKRKDKTGMATLEKVSLSAVQNDRSTIPTNNSENFLKAEKENRPIDGEKDIGEGINVGNSAIKSIVGPAKIHQKDKKTAITSSISEDNKRVKREAACFILSGHRLQRKEFQQMIRRLKGRVCRDSHQWSYQATHFIAPDPIRRTEKFFAATASGRWVLKTDYLTACSQAGNFLAEEPFEWHKNGLSEDGAINMGAPRRWRLLKERTGHGAFYGMRIIIYGDCIAPPLDDNDAACQLCGSRDRGDVMLICGDESGSVGCGIGTHIDCCDPPLKDVPEEDWFCPKCSGTRNCSNSPRKRKKSVSSLSNSK 1121
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi11g0455 1121 SUPERFAMILY BRCT domain 109 192 IPR036420 -
Glsi11g0455 1121 ProSiteProfiles BRCT domain profile. 911 993 IPR001357 -
Glsi11g0455 1121 SMART BRCT_7 902 983 IPR001357 -
Glsi11g0455 1121 SMART BRCT_7 106 183 IPR001357 -
Glsi11g0455 1121 SMART BRCT_7 8 86 IPR001357 -
Glsi11g0455 1121 MobiDBLite consensus disorder prediction 518 546 - -
Glsi11g0455 1121 SUPERFAMILY FYVE/PHD zinc finger 1031 1104 IPR011011 -
Glsi11g0455 1121 Gene3D BRCT domain 902 1019 IPR036420 -
Glsi11g0455 1121 Pfam PHD-finger 1047 1098 IPR019787 -
Glsi11g0455 1121 SUPERFAMILY BRCT domain 7 91 IPR036420 -
Glsi11g0455 1121 CDD BRCT_TopBP1_rpt7 910 983 - -
Glsi11g0455 1121 CDD BRCT_PAXIP1_rpt4 111 185 - -
Glsi11g0455 1121 SUPERFAMILY BRCT domain 911 1012 IPR036420 -
Glsi11g0455 1121 ProSiteProfiles Zinc finger PHD-type profile. 1044 1100 IPR019787 -
Glsi11g0455 1121 MobiDBLite consensus disorder prediction 394 450 - -
Glsi11g0455 1121 ProSiteProfiles BRCT domain profile. 109 193 IPR001357 -
Glsi11g0455 1121 SMART PHD_3 1046 1098 IPR001965 -
Glsi11g0455 1121 Pfam twin BRCT domain 111 175 IPR001357 -
Glsi11g0455 1121 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1039 1120 IPR013083 -
Glsi11g0455 1121 MobiDBLite consensus disorder prediction 687 708 - -
Glsi11g0455 1121 PANTHER BRCA1 C TERMINUS DOMAIN CONTAINING PROTEIN, EXPRESSED 7 763 IPR044254 -
Glsi11g0455 1121 Pfam BRCA1 C Terminus (BRCT) domain 914 979 IPR001357 -
Glsi11g0455 1121 MobiDBLite consensus disorder prediction 1099 1121 - -
Glsi11g0455 1121 Gene3D BRCT domain 3 95 IPR036420 -
Glsi11g0455 1121 Gene3D BRCT domain 99 220 IPR036420 -
Glsi11g0455 1121 MobiDBLite consensus disorder prediction 394 430 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi11g0455 Glsi-ChrGlsi11 2980952 2987197 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi11g0455 129 214 Core DNA Replication Machinery Family AT4G02110 81.395 9.54e-39 155
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Glsi11g0455 BRCT 4.7e-07 CL0459
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi11g0455 11 2980952 2987197 Glsi11g0455 11 2980952 2987197 ECH