Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi11g0447 ATGTTGGTTTCTGTGAAACATTTTAAGGCGTCTGTTGCGTTGATAGTTCCCATCTCGTTGACACCATGTTGGTATGTTATGGTTAAAAATATCGAGCAGCGTGTGAATTTGAATTCACAACTCTTCCTCTCTGAATTGCAATCTGAAATTGAGGACTCAGCTAAACTGTTACACCCTTTGAATTCATCCTCATTATATTTAGCAAGATTTCTGATGAGTTCAAACCTCAGTGATACTAATATATCCTTCTCCGAGATTGAGACCAAGGTGGCTCCGGTATTATTTCAAGCATTTCACGAGATAGTTCCTCACTTAGCCGAAATCTCATACGTTGAAATACAAGGTCTCTTTTTCTCATACTACAGAGATCATGATCGTGATGAAGCTCTTGCAATGTACTCTAACTCTTCTTCCTCTTCGGCTTCCGGTGCTTCAAATGCAACCCTATACTATATTCAGCCTGTAAATCGAGACACCGGAGAATTATATGGGGAACCCATAACATCCGAACGACGTCCCTCTATCAATACAAGTTGGATTCAGGAAGCACTTAATAGTTCCTATGGATGTACCTCAGTGGGAACCATGTGGAGCAATGGTCATCGTGATCTCTTATTCCTTAGTTCAGCTAGAATCACAAGGGCAGGAGTTATCACTTTAGGCTTCCCGGCAACAACAATAACTGATTTTATTACTCGAATCAGCCGTCGAGGCGCAAGCTTGTATTTGGCTACCAAAGACGGAAAAATGCTTGTAGAAGGTATCCAACAAACCCGCATGGTCTTTTCTAATGACAATGACGTGGTTTCCTTTCAATCGGTGAACCCAAAAGGTGGTCCGGTAACTTATGAGGGCACTGTCTCATGCAAGGATAAAGCCGCTGCTTCTGTTTTTGATATTATGGGCACTCACTATTTGCTTCATTGCTCCTCGATAGATCTAATGGGAGTAGAATCGGTACGTTTTGATCTTTTTACTTACTCATCCAATCATAATATGGAAGTGTTTTCAGTAAATCTAACAGGATTGCAGTTTCAGGTTTATGTTTTGGGCGTTCCACAAAATGGATTGGCGAGCTTTGTTCACAAGAGCAGAAAACAGGGATTGACGCTATTGAGTGTAATGACGGTCATGACAGTTTTCTCTATCTTCAGTTTTCTATATATAAATGCTAAATCCGCTATGCGAGAGATGCATTTGTGTGCCTCACTCATCAAACAGATGGAGGCAACTCAACAGGCAGAGAGGAAGAGCGTGAATAAGAGCCATGCTTTTGCTAGTGCCAGCCATGATGTTCGAGCTTCTCTCGCTGCCCTCACTGGTTTGATAGAGATGTCCTATCATGAAGTTGTCCCCGGTTCAGAATTGGAGACCAATTTAAAACAAATGGATTCTTGCAAAACGGAACTAGAGGAAGAGGAATTTGATCTGTCCCAACTTCTGGAAGATGTGGCTGATTTATACCATCCTGTGGCTTTAAAGAAAGGTGTAGATCTTGTATTGGACCCTTGTGATGGTTCTGTCATCAGATATTCGCGCGTGAAAGGTGATCGAGGAAAGCTTAAACAAGTTTTGTGCAATTTACTGAGCAACGCTGTTAAATTTACTGACGAGGGGCACATAGCGGTTCGGTCATGGGGTCAGAGGCCAAGCTTCCAGAAGTCAGTAACCGCTTCTAACCGATACAGTTTCATGAAGCATTTATCATGCTTATATTATAAGGAAAATGAAGAACACAAAGACTTAGAAGCAGCGAATACAATCCAGCAAGATCTAAATTGTATGGATTTTGTATTTGAAGTGGATGATACTGGCAGAGGAATCCCCAAAGAGAAGCACGGGTCTGTGTTTGAGAATTATGTTCAAGTCAGAGAAACTGCTCTTGGACAAGTAGGCACTGGATTGGGACTTGGTATTGTGCGGTCGTTGGTACGTTTGATGCATGGAGATATTGGAATTGTGGACAAGGACATGGGTGAAAAAGGAACCTGCTTCCGGTTCAATGTCCGTCTTACTGTATGTGAAAGAGTCACGGGTGTTAGCACAAGGGAAGGTATTGAGATTGACTCAGGAAGTACCAGGAATCAACCTCGGGGACTAACCATTCGAACTTCTAGTCCTAGGCCAGAAGGTTCCCTTGTTGTTCTTTTGATTCAAGACGAGGAGCGTCGAAGGACTTCACAAAAGTTCATGGAAAGCTTAGGGATTGAAGTTAAGGTTGTGAAGCAGTGGGAACATCTATGTAATACTCTCAAGATGATCAAACAAAAGAAGAGCCATTCCAGCCGAAGTTCTCCAGAGGTATCAGATTTGAGTTATGGGCCTACAACTCAAAATCATGGAACTAACTATATACCTTCAGTTTTCAAGAGAACAAATGTTGGAACTACAACGGGTTTCGTTCTGATTGTGATTGATGCAAATGCAGGACCATTTGTGAAACTTTGCAGGATGGTATCTGACTTCAGAAGAAGCCTTCGCTGTCATTGTAAGGTTGTGTGGTTAGACAAGCCCCTCGTGCGTAGTGTGAATTTCGAAGCCCTTGATGAGGATGTGTTTGACCCAGATGACATTGTAATATCCAAACCATTTCATGGTACTCGTTTGTTTCAAGTTATAAAGCTTCTTCCTGAGTATAGCAGAGGCACCCAGGAATACTTTGGAGATCAATCTTACAGTAGGTACAAAGCAAGACATTCTCCAGTTCATCAAGGTGAAATACAAGAATGTAGTGACTCAAGCTTCGAGGAAACTTTGAGAGGTAAGAAATTTTTGGTTGTTGAGGACGCTGAATTGTTACGCAAGCTAGCTGCAGCTGCTCTGATACGGCTGGGTGCAAGCGTTGAGCAATGCGAGAACGGTGAAAAAGCTGTGAAGCTAGTTGAGGACGGTCTAAAGGGGGCTTCTTCAAGTCTTCCTTACGATTACATCTTAATGGACTGCGAGATGCCAGTAATGGACGGGTTTGAGGCAACGAGGCGAATAAGGGCGATAGAGAAGAGCTATGGCGTTCACATTCCTATCATTGCACTAACTGCTCATACGGCAGGGAAAGAGACAAGGATGACCAGAGAGGCTGGAATGGACGTTCATTTGGGCAAACCCATAAGGAAAGAGCGTTTACTGGAAGCCGTACAATACATTCATATTCAAAGCAAAGCGTGA 3165 0.4272 MLVSVKHFKASVALIVPISLTPCWYVMVKNIEQRVNLNSQLFLSELQSEIEDSAKLLHPLNSSSLYLARFLMSSNLSDTNISFSEIETKVAPVLFQAFHEIVPHLAEISYVEIQGLFFSYYRDHDRDEALAMYSNSSSSSASGASNATLYYIQPVNRDTGELYGEPITSERRPSINTSWIQEALNSSYGCTSVGTMWSNGHRDLLFLSSARITRAGVITLGFPATTITDFITRISRRGASLYLATKDGKMLVEGIQQTRMVFSNDNDVVSFQSVNPKGGPVTYEGTVSCKDKAAASVFDIMGTHYLLHCSSIDLMGVESVRFDLFTYSSNHNMEVFSVNLTGLQFQVYVLGVPQNGLASFVHKSRKQGLTLLSVMTVMTVFSIFSFLYINAKSAMREMHLCASLIKQMEATQQAERKSVNKSHAFASASHDVRASLAALTGLIEMSYHEVVPGSELETNLKQMDSCKTELEEEEFDLSQLLEDVADLYHPVALKKGVDLVLDPCDGSVIRYSRVKGDRGKLKQVLCNLLSNAVKFTDEGHIAVRSWGQRPSFQKSVTASNRYSFMKHLSCLYYKENEEHKDLEAANTIQQDLNCMDFVFEVDDTGRGIPKEKHGSVFENYVQVRETALGQVGTGLGLGIVRSLVRLMHGDIGIVDKDMGEKGTCFRFNVRLTVCERVTGVSTREGIEIDSGSTRNQPRGLTIRTSSPRPEGSLVVLLIQDEERRRTSQKFMESLGIEVKVVKQWEHLCNTLKMIKQKKSHSSRSSPEVSDLSYGPTTQNHGTNYIPSVFKRTNVGTTTGFVLIVIDANAGPFVKLCRMVSDFRRSLRCHCKVVWLDKPLVRSVNFEALDEDVFDPDDIVISKPFHGTRLFQVIKLLPEYSRGTQEYFGDQSYSRYKARHSPVHQGEIQECSDSSFEETLRGKKFLVVEDAELLRKLAAAALIRLGASVEQCENGEKAVKLVEDGLKGASSSLPYDYILMDCEMPVMDGFEATRRIRAIEKSYGVHIPIIALTAHTAGKETRMTREAGMDVHLGKPIRKERLLEAVQYIHIQSKA 1054
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi11g0447 1054 Coils Coil 463 483 - -
Glsi11g0447 1054 MobiDBLite consensus disorder prediction 687 707 - -
Glsi11g0447 1054 ProSiteProfiles Histidine kinase domain profile. 427 673 IPR005467 -
Glsi11g0447 1054 MobiDBLite consensus disorder prediction 757 776 - -
Glsi11g0447 1054 ProSiteProfiles Response regulatory domain profile. 923 1049 IPR001789 GO:0000160
Glsi11g0447 1054 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 462 669 IPR036890 -
Glsi11g0447 1054 SUPERFAMILY CheY-like 921 1048 IPR011006 -
Glsi11g0447 1054 CDD REC_hyHK_CKI1_RcsC-like 924 1045 - -
Glsi11g0447 1054 Gene3D - 901 1052 - -
Glsi11g0447 1054 SMART HKATPase_4 516 673 IPR003594 -
Glsi11g0447 1054 PANTHER TWO-COMPONENT HISTIDINE KINASE 23 1046 - -
Glsi11g0447 1054 Pfam Response regulator receiver domain 925 1046 IPR001789 GO:0000160
Glsi11g0447 1054 Gene3D - 466 678 IPR036890 -
Glsi11g0447 1054 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 516 672 IPR003594 -
Glsi11g0447 1054 SMART REC_2 922 1045 IPR001789 GO:0000160
Glsi11g0447 1054 PRINTS Bacterial sensor protein C-terminal signature 615 625 IPR004358 GO:0016310|GO:0016772
Glsi11g0447 1054 PRINTS Bacterial sensor protein C-terminal signature 597 611 IPR004358 GO:0016310|GO:0016772
Glsi11g0447 1054 PRINTS Bacterial sensor protein C-terminal signature 631 649 IPR004358 GO:0016310|GO:0016772
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi11g0447 Glsi-ChrGlsi11 2933351 2937076 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi11g0447 24 1038 Histidine Kinase Gene Family AT2G47430 38.116 0.0 672
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Glsi11g0447 HATPase_c 1.2e-24 CL0025