Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi11g0426 ATGTCGAAGAGGAAGTTCGGGTTCGAAGGTTTTGGAATAAACCGCCAATCCACCTATAATTTTGAGCGATCTCAAGCTCCGCAGCGACTGTATGTCCCCCCTTCCTCGCGTCATGGGCATGACAATTACGAGGACACTGACATCGACAACATCGATTACGATGACAATGATATTGCCAAGGACGGCAGCAATAATAATGGCAGCAATAACGAAGGTAGCAACGACGAAGTTGATCCCCTAGATGCTTTCATGGAAGGGATTCACGAGGAAATGAAGGCCGCGCCGGCTCCAAAGCCGAAAGAGAAGGCGGAGGATAGGTATAGAGATGATGATGAGGAGGATCCGATGGATAGTTTCTTGAGGGCGAAGAAGGACGTAGGGTTGACGCTGGCGTCCGAGGCTTTGCATGCTGGATATGATTCTGACGAGGAGGTTTATGCTGCTGCAAAGGCTGTGGACGCGGGAATGATAGACTATGATTCTGATGATAATCCCATAATTGTTGACAAGAAGAAAATTGAGCCGATATCCGCTCTGGATCACAGTTCCATTGATTACGAGCCGTTTAATAAGGATTTTTACGAGGAGAAACCTTCAATATCAGGTATGAATGAGCAAGATGTTAGTGAATACCGGAAGAGTTTGGCTATTCGCGTATCAGGTTTTGATGTTCCTAAGCCAATTAAGACATTTGAGGACTCTGGTTTTTCTCCACAACTTATGAATGCTATAAAAAAACAAGGTTATGAGAAGCCGACATCAATACAGTGCCAAGCTTTACCTGTTATACTTTCTGGTAGAGATGTCATTGGTATAGCAAAAACTGGTTCTGGTAAAACTGCTGCTTTTGTGCTTCCTATGATTGTTCATATCATGGATCAGCCTGAACTTAAGAAGGAAGAGGGTCCTATAGGAGTCGTATGTGCTCCTACTAGAGAACTGGCACATCAGATATATTTGGAATCCAAGAAATTTGCAAAATCAAATGGTATACGTGTTTCTGCTATCTATGGTGGAATGTCAAAACTTGAGCAGTTCAAAGAACTCAAGGCAGGCTGTGAGATAGTTATTGCTACCCCGGGCAGATTGATAGACTTGCTAAAAATGAAGGCCCTGACAATGATGAAAGCAACTTACTTGGTGCTTGATGAGGCTGATCGGATGTTCGATCTGGGATTTGAGCCACAAATAAGGTCCATAGTTGGACAGATTAGGCCAGACCGCCAAACATTACTTTTTTCTGCTACAATGCCCCGTAAAGTTGAAAAGCTGGCCAGGGAAATTCTTACTGATCCTATTAGAGTAACAGTTGGTGAGGTTGGAATGGCAAATGAGGATATTACTCAGGTTGTTCAAGTAATTCCTTCTGATTCAGAGAAATTGCCTTGGCTTTTGGAAAAGTTGCCTGGAATGATCGATGAAGGTGATGTCCTAGTATTTGCTTCCAAAAAGGCCACAGTAGATGAAATTGAATCACAATTGGCTCCGAGAGGCCTTAAAGTTGCATCCTTGCATGGTGATAAAGATCAAGCTTCTCGTATGGATATTTTGCAGAAGTTTAAATCTGGGGTCTACCATGTGCTCATTGCAACTGATGTTGCTGCTCGTGGTCTTGACATCAAGTCAATTAAGTCAGTGGTAAACTTTGACATTGCAAAGGATATGGACATGCATGTCCATCGCATTGGTAGAACAGGTCGTGCTGGTGACAAAGATGGGGTTGCATACACTCTTATAACTCAAAAGGAAGCACGGTTTGCTGGTGAATTGGTTAATTGCTTAATTGCTGCTGGTCAGAATGTGTCCATGGAACTGATGGATCTTGCTATGAAGGATGGGAGATTCAGGTCCAAACGTGATGCTAGAAAAGGAGTTGGGAGAAAAGGCAAGGGAAGAGGAGGTGGTGGAGTTCGAGGTGTGCGGGGAGTGGATTTTGGCTTGGGTATTGGATATAATCCGGATTCCAACAACACTTCATCTAACACAGTTCCAAGTCGATCTGCTAACACAGTTCCAAGTCGATCTGCCACTGTAAATTCTCTCCGGACAGGAATGATGACACAATTTAAGAGTAACTTTGTTGCTGCTTCATCAAACTCACAAAATCAAGGATTCAGTAACAGTACGAGCATGCTCGCTAATAAGAGACCAGCACTCCATGGCTTTGTTTCTGGTGGATCAATTGGTGGGGATATAAATCCTACAACCATGCCTGCTAATAAGAGACCAGCGCTCACTGGCTTTGTATCTGGTGGATCAATTGGTGGAGATATGAATACTAATCGGATGTCCGCTTCATTCAGTCCTGCAACGTCAGCAGAAAATCCCATTAGTGAGGATTTTGGAGTAGGCGCCAGTCAGAAGAAAATAGACAGTTCTAAACCTAGAGAACGGCGGAGGCCGTCAGGTTGGGATAGGTAG 2421 0.4391 MSKRKFGFEGFGINRQSTYNFERSQAPQRLYVPPSSRHGHDNYEDTDIDNIDYDDNDIAKDGSNNNGSNNEGSNDEVDPLDAFMEGIHEEMKAAPAPKPKEKAEDRYRDDDEEDPMDSFLRAKKDVGLTLASEALHAGYDSDEEVYAAAKAVDAGMIDYDSDDNPIIVDKKKIEPISALDHSSIDYEPFNKDFYEEKPSISGMNEQDVSEYRKSLAIRVSGFDVPKPIKTFEDSGFSPQLMNAIKKQGYEKPTSIQCQALPVILSGRDVIGIAKTGSGKTAAFVLPMIVHIMDQPELKKEEGPIGVVCAPTRELAHQIYLESKKFAKSNGIRVSAIYGGMSKLEQFKELKAGCEIVIATPGRLIDLLKMKALTMMKATYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFSATMPRKVEKLAREILTDPIRVTVGEVGMANEDITQVVQVIPSDSEKLPWLLEKLPGMIDEGDVLVFASKKATVDEIESQLAPRGLKVASLHGDKDQASRMDILQKFKSGVYHVLIATDVAARGLDIKSIKSVVNFDIAKDMDMHVHRIGRTGRAGDKDGVAYTLITQKEARFAGELVNCLIAAGQNVSMELMDLAMKDGRFRSKRDARKGVGRKGKGRGGGGVRGVRGVDFGLGIGYNPDSNNTSSNTVPSRSANTVPSRSATVNSLRTGMMTQFKSNFVAASSNSQNQGFSNSTSMLANKRPALHGFVSGGSIGGDINPTTMPANKRPALTGFVSGGSIGGDMNTNRMSASFSPATSAENPISEDFGVGASQKKIDSSKPRERRRPSGWDR 806
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi11g0426 806 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 195 609 - -
Glsi11g0426 806 MobiDBLite consensus disorder prediction 790 806 - -
Glsi11g0426 806 Pfam Helicase conserved C-terminal domain 473 569 IPR001650 -
Glsi11g0426 806 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 260 435 IPR014001 -
Glsi11g0426 806 Gene3D - 191 436 IPR027417 -
Glsi11g0426 806 MobiDBLite consensus disorder prediction 1 78 - -
Glsi11g0426 806 CDD DEADc_DDX42 240 436 - -
Glsi11g0426 806 Pfam DEAD/DEAH box helicase 253 424 IPR011545 GO:0003676|GO:0005524
Glsi11g0426 806 SMART ultradead3 248 450 IPR014001 -
Glsi11g0426 806 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 376 608 IPR027417 -
Glsi11g0426 806 MobiDBLite consensus disorder prediction 651 676 - -
Glsi11g0426 806 MobiDBLite consensus disorder prediction 90 115 - -
Glsi11g0426 806 MobiDBLite consensus disorder prediction 619 639 - -
Glsi11g0426 806 MobiDBLite consensus disorder prediction 760 806 - -
Glsi11g0426 806 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 229 257 IPR014014 GO:0003724
Glsi11g0426 806 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 460 609 IPR001650 -
Glsi11g0426 806 MobiDBLite consensus disorder prediction 760 775 - -
Glsi11g0426 806 MobiDBLite consensus disorder prediction 60 75 - -
Glsi11g0426 806 Gene3D - 437 613 IPR027417 -
Glsi11g0426 806 FunFam probable ATP-dependent RNA helicase DDX17 191 438 - -
Glsi11g0426 806 MobiDBLite consensus disorder prediction 13 31 - -
Glsi11g0426 806 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 381 389 IPR000629 -
Glsi11g0426 806 SMART helicmild6 488 569 IPR001650 -
Glsi11g0426 806 CDD SF2_C_DEAD 447 579 - -
Glsi11g0426 806 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 212 438 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi11g0426 Glsi-ChrGlsi11 2816761 2821188 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi11g0426 226 579 Eukaryotic Initiation Factors Gene Family AT3G19760 33.053 1.96e-61 211