Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi11g0416 ATGGGTGTGAAGACGGAGGAAGCAGTTAGATCCTCTTCATTCCCCAGTTTTAATTCAAACGGTTTTCCACTTTCGAGTGTATTTGATTTCTCTGAAGTAGAAAAGAGCTCTTTAGGGTTTATGGAGTTACTGGGTGTGCAGGACTATAGTCCTCTGCCTGATTTGCCGCAAGTATCAACTTTGGTTTCCTCTGCTATCACAGATCCATCTGCGGCTGCAAAAGAGTGTTGTGAGGTTTTGAATCAACAGCCCGCCACTCCAAACTCTTCATCGATTTCATCGGCGTCTAGTGAGGCAGTCAATGATGAACAGAATAAAACTGTAGACCAAGGAGAAGAACAGCAACAGACCAAGAAACAATTGAAGCCCAGGAAGACAAACCAGAAGAGACAGAGAGAACCAAGATTCGCGTTCATGACGAAAAGCGAGGTCGATCTTCTGGAAGACGGGTATAAATGGAGAAAGTACGGTCAAAAAGCTGTGAAAAACAGCTCCTTTCCCAGGAGCTATTATCGTTGCACCAGCGCTTCATGTAATGTGAAGAAACGAGTGGAGCGATCGTTCACCGATCCAAGCATTGTAGTCACAACCTATGAAGGCCAACATACACATCCAAACCCAATTATGCCTCGCTCAATACCTCCAGTTGTCTTCGCCGGAAACTTATCACAGTATCAGCAGCACCAACATCAGCAATTCCTTGTTAACACATTGTCGTCGGTGGGTTTTGCTGGCAATGATTCAACTTCACGGAATCCAGGGACGAATGGTTTTCTGAGGGACCATGGCCTTCTCCAAGACATTATTCCTTCACATATGTTGAAAGAAGAGTAG 834 0.4496 MGVKTEEAVRSSSFPSFNSNGFPLSSVFDFSEVEKSSLGFMELLGVQDYSPLPDLPQVSTLVSSAITDPSAAAKECCEVLNQQPATPNSSSISSASSEAVNDEQNKTVDQGEEQQQTKKQLKPRKTNQKRQREPRFAFMTKSEVDLLEDGYKWRKYGQKAVKNSSFPRSYYRCTSASCNVKKRVERSFTDPSIVVTTYEGQHTHPNPIMPRSIPPVVFAGNLSQYQQHQHQQFLVNTLSSVGFAGNDSTSRNPGTNGFLRDHGLLQDIIPSHMLKEE 277
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi11g0416 277 MobiDBLite consensus disorder prediction 83 104 - -
Glsi11g0416 277 MobiDBLite consensus disorder prediction 83 136 - -
Glsi11g0416 277 SUPERFAMILY WRKY DNA-binding domain 139 207 IPR036576 GO:0003700|GO:0006355|GO:0043565
Glsi11g0416 277 FunFam WRKY transcription factor 57 133 207 - -
Glsi11g0416 277 MobiDBLite consensus disorder prediction 105 120 - -
Glsi11g0416 277 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 82 229 IPR044810 GO:0003700
Glsi11g0416 277 PIRSF WRKY_txn_fact_IIc 1 277 IPR017396 GO:0003700
Glsi11g0416 277 SMART WRKY_cls 147 206 IPR003657 GO:0003700|GO:0006355|GO:0043565
Glsi11g0416 277 ProSiteProfiles WRKY domain profile. 142 207 IPR003657 GO:0003700|GO:0006355|GO:0043565
Glsi11g0416 277 Gene3D WRKY domain 131 208 IPR036576 GO:0003700|GO:0006355|GO:0043565
Glsi11g0416 277 Pfam WRKY DNA -binding domain 148 205 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi11g0416 Glsi-ChrGlsi11 2750683 2751993 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi11g0416 26 277 WRKY Transcription Factor Family AT2G47260 45.732 2.60e-66 208
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Glsi11g0416 WRKY 3e-26 CL0274
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi02g3447 02 81728800 81730245 Glsi11g0416 11 2750683 2751993 CCT
Glsi11g0416 11 2750683 2751993 Glsi11g0416 11 2750683 2751993 ECH