Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi11g0414 ATGAGGGGCATGTCAAGCAATTCATTCGGTGCCGGAGGACCTCTCTCTACCAATGGTGACTGTGGATATGGTTCTGACCATTCCATGCCCCGTCCTGGCCGGAAACGAGGTTGGCATCACTCTAACCAAGGAACTTCTCCAGGTGATCAAGATTCAGAATTGAATATAAAATTCTACATTCTTGGCTCCAATAAGGACATTGTATTCAGCGCTCTCCTTATTGCAGATCAAGTTGATGGTGCATATAATGTGAAACTTTATATTTCACCAGTTCCAAGAACCACAACAGAAGCTGATATCCGCCTTGTGTTTGAAGTACATGGAACTATTGTTGAAGTTGTGCTTCTAAGAGATAAGAGAACTGGCCAACGACAAGGAAGCTGTTTTGTGAAATATGCAACTTTAGACGAAGCTGACAGGGCTATCAAAGCTTTAAGTAATCAGTATATTTTTCCTGGGGAATCATCTCCCATTGTTGTCAAATTTGCTGATCGAGAACTTGAGCGTCTCGGGGTTCGAGGGTTCTTCCAAAACATGGATAAAAAAAATTCTTCAGAAGAGGTGGTGGACAAAGTGTTTGTTGGTTATCTCAGCAAAGAAGCTTCGAAAAAGGAAATTGAAGAAATATTTTCCCCTTATGGACATATAGAGGATATTTTCATTGCCCAAAGTCGAGGATATGGTTTTGTCAAATTTTCAAATAGAGAAATGGCATTGGCAGCAATCAAAGGGCTGAACAAAACATTCACAATGAGGGGTTGTGATCATCCATTAATTGTTCGTTTTGCGGATCCTAAGAAACCTAAGACTGGAGAACCAAGGGTCAACTATTCATCAGGGAGTGCATTTGGTCCATGGTCTCAAGAACCAGCAGTTTGGCCACTGCCAAACTATGGTGATTCCCTTGGAGGGAGTAATCTGCCTATGGCCCCACATCATTCCACAATTCCACACCCACAAGTTGCTTCTCATATCCAAAACTGGGAACCTGCTACTACGGCAGTGCAACAACCATTTCCTCCCCAACAAACCCATTCACAATTGGCTTCAATACCCTTGCAGTCGAATCAAGCTCAAACATCTTCTCAACCAGTTGTTACTGAGGTGCAAGAGCAATCACATGCAACAGATTCGTCAGCACAAAATATAGACCAGCAGCTAAGTTCACAGACTGGAAGCAATCCTTATACTGTTGCTGGCAATACATCACCAGACATGCCTGCTAGTCCCCAAGAAGAAGCTTTTCCAGACTGTGACTGGAGCGAACACATCTGCCCTGATGGTTTTAAGTACTACTACAACTGTATCACTTGTGAAAGCAAGTGGGAGAAGCCTGAGGAGTATACCTCTAATGAGAACGAATTACAAAAGCAGCAAGAGCAGGAGGATCATAGCTGTCTTCATTCGTAA 1410 0.4298 MRGMSSNSFGAGGPLSTNGDCGYGSDHSMPRPGRKRGWHHSNQGTSPGDQDSELNIKFYILGSNKDIVFSALLIADQVDGAYNVKLYISPVPRTTTEADIRLVFEVHGTIVEVVLLRDKRTGQRQGSCFVKYATLDEADRAIKALSNQYIFPGESSPIVVKFADRELERLGVRGFFQNMDKKNSSEEVVDKVFVGYLSKEASKKEIEEIFSPYGHIEDIFIAQSRGYGFVKFSNREMALAAIKGLNKTFTMRGCDHPLIVRFADPKKPKTGEPRVNYSSGSAFGPWSQEPAVWPLPNYGDSLGGSNLPMAPHHSTIPHPQVASHIQNWEPATTAVQQPFPPQQTHSQLASIPLQSNQAQTSSQPVVTEVQEQSHATDSSAQNIDQQLSSQTGSNPYTVAGNTSPDMPASPQEEAFPDCDWSEHICPDGFKYYYNCITCESKWEKPEEYTSNENELQKQQEQEDHSCLHS 469
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi11g0414 469 Gene3D - 401 466 - -
Glsi11g0414 469 MobiDBLite consensus disorder prediction 446 469 - -
Glsi11g0414 469 Gene3D - 77 169 IPR012677 -
Glsi11g0414 469 SUPERFAMILY WW domain 419 450 IPR036020 GO:0005515
Glsi11g0414 469 MobiDBLite consensus disorder prediction 1 49 - -
Glsi11g0414 469 ProSiteProfiles WW/rsp5/WWP domain profile. 420 447 IPR001202 GO:0005515
Glsi11g0414 469 MobiDBLite consensus disorder prediction 336 414 - -
Glsi11g0414 469 SUPERFAMILY RNA-binding domain, RBD 83 177 IPR035979 GO:0003676
Glsi11g0414 469 PANTHER RNA BINDING PROTEIN 34 430 - -
Glsi11g0414 469 Gene3D - 177 271 IPR012677 -
Glsi11g0414 469 SUPERFAMILY RNA-binding domain, RBD 191 281 IPR035979 GO:0003676
Glsi11g0414 469 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 190 265 IPR000504 GO:0003723
Glsi11g0414 469 CDD WW 418 447 IPR001202 GO:0005515
Glsi11g0414 469 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 86 150 IPR000504 GO:0003723
Glsi11g0414 469 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 192 250 IPR000504 GO:0003723
Glsi11g0414 469 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 84 165 IPR000504 GO:0003723
Glsi11g0414 469 SMART rrm1_1 191 261 IPR000504 GO:0003723
Glsi11g0414 469 SMART rrm1_1 85 161 IPR000504 GO:0003723
Glsi11g0414 469 MobiDBLite consensus disorder prediction 336 408 - -
Glsi11g0414 469 Pfam WW domain 419 445 IPR001202 GO:0005515
Glsi11g0414 469 SMART ww_5 415 447 IPR001202 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi11g0414 Glsi-ChrGlsi11 2739565 2748652 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi11g0414 86 294 Eukaryotic Initiation Factors Gene Family AT1G49760 25.571 3.78e-11 63.5