Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi11g0405 ATGGTTCCCAAAACCCATTTCCAAGTCATTCTGTTGCTTCTTTCATGTTTATACATCACTTCCGAATCTTCCTCTGGGACCTCAGATAGGCATACAGATTATGAGAATTGGATTTCTTGGAACCTCAGGAATTACCGGAAGGTGACTATGTTGGAGACCAAACGGAATGTTGCAGCACCTGGGGCTACTGGAAAAGCTCCTGATTTGAATCTGAGGATGGCTGAGATTAACCAAGTCAGAATAAGTGTTCGCCAGGAGGACGATCCTAGTGGTGACTTCAAGACCATTACAGAAGCTGTTGATAGCATTCCACCAGACAACACCAGAAGAGTTATACTGGTGATTGGACCAGGTGTTTATAGGGAGAAGATTATGATTCCCGGAAATTTGCCCTTTATCACATTCTTAGGGGACGCTTGGGATCCACCCACCATTACTGGGAATGATACAGCATCGGTAACTGGAAAGGATGGGAAGCCATTGGGGACAGCCCAGAGCGCCACTGTTGCTGTGGATGCTAATTATTTTATGGCCATCAACATAAGATTTGAGAACACTGCACCGCACGAGGTTGGTGCGGTGGGAGGACAAAGCGTGGCGCTTCGCATCTCAGGGACCAAAGCGGCATTTTACGATTGCATCTTCTTTGGGTTTCAAGACACACTATATGATGACAAAGGACTTCATTACTTCAGTAATTGCTACATTCAAGGCTCCGTAGATTTCATCTTCGGCTCCGGCAGATCCCTTTACGAGAACTGCTATATAAATTCGATAGCGAAGAAGGTGGCGTCCATCACGGCTCAAAAGCGCACAATTTCATCGTTAGAAAGTGGGTTTTCCTTCAAAAACAGCGTAATAAACGGGAGTGGGACTGTATATCTGGGAAGAGCGTGGGGAGATTATTCCAGAGTTGTTTTCTCATACAGCTACATGGACAAGATTGTTCTGCCCCAAGGCTGGAGTGATTGGGGTGACCAAAAGCGAGACTTGAAAGTGTACTATGGAGAATACAAGTGTAGTGGGCCTGGGGCTAACATGACAGCAAGAGTGGCTTGGGCACGCATGCTTACCGACACTGAGGCTCGCCCTTTTATTGGGACTCATTACATTGAAGGGGACACTTGGCTTATTTCCCTCCCTAACTGA 1149 0.4648 MVPKTHFQVILLLLSCLYITSESSSGTSDRHTDYENWISWNLRNYRKVTMLETKRNVAAPGATGKAPDLNLRMAEINQVRISVRQEDDPSGDFKTITEAVDSIPPDNTRRVILVIGPGVYREKIMIPGNLPFITFLGDAWDPPTITGNDTASVTGKDGKPLGTAQSATVAVDANYFMAINIRFENTAPHEVGAVGGQSVALRISGTKAAFYDCIFFGFQDTLYDDKGLHYFSNCYIQGSVDFIFGSGRSLYENCYINSIAKKVASITAQKRTISSLESGFSFKNSVINGSGTVYLGRAWGDYSRVVFSYSYMDKIVLPQGWSDWGDQKRDLKVYYGEYKCSGPGANMTARVAWARMLTDTEARPFIGTHYIEGDTWLISLPN 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi11g0405 382 Pfam Pectinesterase 87 374 IPR000070 GO:0030599|GO:0042545
Glsi11g0405 382 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 16 - -
Glsi11g0405 382 SUPERFAMILY Pectin lyase-like 87 377 IPR011050 -
Glsi11g0405 382 FunFam Pectinesterase 77 379 - -
Glsi11g0405 382 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 74 377 - -
Glsi11g0405 382 ProSitePatterns Pectinesterase signature 2. 236 245 IPR033131 -
Glsi11g0405 382 Gene3D - 77 380 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi11g0405 Glsi-ChrGlsi11 2695178 2696890 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi11g0405 92 377 Carbohydrate Esterase AT5G47500 47.222 1.74e-91 277
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi11g0405 11 2695178 2696890 Glsi11g0405 11 2695178 2696890 ECH